FMO05914.5prime Sequence
1155 bp (977 high quality bases) assembled on 2008-09-15
> FMO05914.5prime
CAGTCGACATGGCTGCGACGAGAAAATTGCAAGGCGAAATTGATCGATGT
TTAAAAAAGGTAGCAGAGGGCGTTGAAACGTTTGAGGATATTTGGAAAAA
AGTACACAATGCGACAAACACCAATCAGAAGCAAAAACATCTGCAGGAGA
AGTATGAGGCAGACCTCAAAAAGGAAATCAAGAAATTGCAACGACTTCGC
GACCAAATTAAATCATGGATTGCATCAGCTGAAATTAAGGATAAGAGCTC
CCTTCTTGAGAATCGACGTCTCATTGAAACACAAATGGAACGCTTTAAGG
TGGTTGAGCGCGAGACGAAAACAAAAGCCTACTCCAAGGAAGGCTTGGGG
GCTGCACAAAAGATGGATCCTGCCCAGCGTATTAAAGACGACGCACGCAA
TTGGTTAACCAGCTCAATAAGTTCCCTTCAAATACAAATTGACCAGTATG
AGAGCGAGATCGAATCGTTGTTGGCAGGTAAAAAGAAACGTTTAGATCGA
GACAAGCAGGAGCGAATGGATGACCTACGAGGAAAGTTGGACCGCCATAA
GTTCCACATAACAAAGCTGGAAACTCTGCTTAGGCTGCTTGACAATGACG
GCGTCGAAGCAGAGCAGGTAAACAAGATCAAAGACGATGTCGAATACTAC
ATTGATTCATCGCAAGAGCCAGACTTTGAGGAAAATGAGTTCATATACGA
TGATATAATTGGTCTTGATGAAGTGGAGCTAAGTGGCACGGCTACCACGG
ACAGCACAACAGCAACGAGACAAGCGGTTCTCCAAGCAGTGTCACATCCG
GGAGGCAGTCATCACAGTCCCCTGTACGGTTCAAAAATTTTAAACACTTC
GTCGCAGGGGGCAGCTAGTATTGTAGCAGCGCAGCTAGCGCACACTGTTC
AGCAGCAGCTGACAGCGGCACAATCAAATGCCAACAATGTGGGCTACCCA
GCGACACAGTGCAGCTTCCTCGTCTGCTACACATCTACAGATCTGCAGCG
GAAAGTTGCTGGAAATTGTGTTGGAAGCTAGCCGATAACGCCACAAGAAC
AGCGAAGCAATGCTCTAAAATTGAAACCACACACTCATCAATCTATAAAA
CTTATCCCTTCCAGAGCCACGGCCAGACCGCCCTTGAGACAGGGGATACC
AGTAT
FMO05914.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Not3-RB | 3919 | CG8426-RB | 580..1711 | 9..1125 | 4925 | 96.7 | Plus |
Not3-RA | 3406 | CG8426-RA | 580..1711 | 9..1125 | 4925 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5661359..5662168 | 1076..282 | 3045 | 96.3 | Minus |
2R | 25286936 | 2R | 5662227..5662378 | 281..130 | 760 | 100 | Minus |
2R | 25286936 | 2R | 5662456..5662555 | 131..32 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:01 has no hits.
FMO05914.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:40 Download gff for
FMO05914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)NC136-RA | 573..1724 | 1..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:47 Download gff for
FMO05914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)NC136-RA | 571..1722 | 1..1138 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:12 Download gff for
FMO05914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Not3-RA | 573..1724 | 1..1138 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:12 Download gff for
FMO05914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5662456..5662553 | 34..131 | 100 | <- | Minus |
2R | 5661359..5662168 | 282..1076 | 96 | <- | Minus |
2R | 5662227..5662376 | 132..281 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:40 Download gff for
FMO05914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1548864..1549673 | 282..1076 | 96 | <- | Minus |
arm_2R | 1549732..1549881 | 132..281 | 100 | <- | Minus |
arm_2R | 1549961..1550058 | 34..131 | 100 | <- | Minus |