FMO05916.5prime Sequence
1208 bp (1015 high quality bases) assembled on 2008-09-09
> FMO05916.5prime
CAGTCGACATGGCAACTCACGCCGAAAAGGAGTTCTACCACCTGAACGTC
AGCGTGTCCAAAGCTTTAAATGGCCTGGAAGCGCCACTCAAAACCAAACA
TGCCCGCTCCATTATTATTATGATACACAAGGCCAAAGAGGCCAAAACAT
TCTGGATGATCATCTCCCGGCAGCCTTTGATGCAGAGTAGATTTACTGCC
TGGAAGTTTTCGCATCTGCTGCACAAGGTCCTGCGAGAGGGTCATGAAAG
TGCCATCCGCCACTCGCAGAGCCACAAGAAGATGATACTGGAGGTGGGAA
AAATGTGGGGCCTGCTGCAGGACGATATTGGATGCTGCATACAGGCGTAT
AGTAAGCTCTTGGCCACAAAATTAAACTTCCACGACAAAAATCGAATGTT
TCCCGGCACCCTGAACATTTCGTTCACGGAACTCTTCATTGCTGTGGATA
GGGATTTAAATTATTGTTTTCAACTGTGCGTGGAAATTTTCGACTACTTG
GAGGATATAATTGCGCTGCAATTGACGATATTTTCATCTATGGAAAAGTA
CAGAATGTCGTCGATGACACCGCAGGGACAATGTAGATTAGCGCCAATAG
TTTGCCTTATCCAGGATTCCAATGCGTTGTACGATTTAAGCGTTCGGTTA
ATGTTTAAACTACACGATGGTGTACCATACGACGTTGTTTCCGGACACAG
AGATCGCTTTCACGGTCTGTTTTTAAAGTTGAAGAGTTTTTACAACAACG
TGCGACCGCTTCAGTATTTCAAGGACCTAAATAACAATCCCGGAATTGCC
CGGACTCAAGTCCTAACTTCAAGTCCCAAAACGATTTCACCAGTTATGTA
CCGCCAGTGGTTCACGTTCCCCAGAGCCCGATCCGGTTGTTGAAGACCTT
GTGGATACCAACAATCACGAGCTGGAAGCTTCAGTCAGCCCAGCAGCAGC
TTAGCATGTTGGAGGTATATCAGCGAGAAGAGCTAGCATTGAGAGCTGTC
ATTCAAATGGGACGCATGCAAAAAATTCGACGCACTGCAGCAAGCTACAG
ACCGACGTTAGATGCACGAAACATTCTGGCTGTCAAATGATCTGCCTGCA
AGAAATGTGCCCCTTCGATGCGATGACGATTGAATGCACTGATCGAACCA
TCTACAAGCCTGGGAAAGAAAGCAACGGCTCGAAGGTTTAAACTTAACTT
AATCAACG
FMO05916.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip1-RA | 4093 | CG10971-RA | 264..1367 | 9..1094 | 4945 | 97.6 | Plus |
| Hip1-RB | 4099 | CG10971-RB | 477..1544 | 45..1094 | 4765 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12771517..12772103 | 1043..466 | 2320 | 97.3 | Minus |
| 3L | 28110227 | 3L | 12772162..12772584 | 466..44 | 2115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:45 has no hits.
FMO05916.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:00 Download gff for
FMO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip1-RA | 255..1367 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:03:25 Download gff for
FMO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10971-RA | 251..1363 | 1..1094 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:15 Download gff for
FMO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip1-RA | 255..1367 | 1..1094 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:15 Download gff for
FMO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12771457..12772102 | 467..1094 | 95 | <- | Minus |
| 3L | 12772162..12772583 | 45..466 | 100 | <- | Minus |
| 3L | 12773275..12773319 | 1..44 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:00 Download gff for
FMO05916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12764557..12765202 | 467..1094 | 95 | <- | Minus |
| arm_3L | 12765262..12765683 | 45..466 | 100 | <- | Minus |
| arm_3L | 12766375..12766419 | 1..44 | 93 | | Minus |
