FMO05919.5prime Sequence
1122 bp (925 high quality bases) assembled on 2008-09-15
> FMO05919.5prime
CAGTCGACATGACGTTTCACAAAACCTTTGGTTACGGATGCATTGTATTA
ATATGTTTTGAACTCCTGTTTGCTGGAGTTGAAACGTCCAGCGAAAATGA
TGATGAATATTTAACACAGAAAGAAATCATATTAGAAAAGTCATATCACG
GTTTAATTCGAGAAAATGAAACACTTGTAGAAATAACTCCCCTTATTAAA
GTGAACGAAGAGAAAATTTGTAACTTCCATATTCTCAAAAAACCGTATCA
CGAAATTCCATTTAAGATTGAACTGGTAAATAACCTAGGTATTTTAAAAG
CACGTCGGACACTAAATTGCGAGAATCGTAAAAGTTATCACTTTGAAATC
TGTGCAATCTATTGTGATGGAACACCTTCAAATACAGCCAATGTTCATAT
TACTGTTATCGACGTAAATGAGTATGCTCCAACATTCTTAGAACCGTCTT
ACGTAATTGAAGTAGACGAGGGAAGACTTTATAACGAGATCCTAAGAGTC
GAAGCTTCCGATAAAGACTGCACTCCGCTCTTTGGTGATGTTTGCAAATA
TGAGATTCTTAACAATGATGAACCATTTTCAATAGATAACGAAGGTTCAA
TTAAAAACACTGAACCACTTTCTCACAAAGCTTCTCATAACCACATTCTG
TCCGTGGTTGCCTATGATTGTGCAATGAAAGAATCTGCACCCCATTATGG
TCAGCATTAAAGTTCGACGCGTTTGTGAAAACAAAGTTTGTAGGCATGCC
AGAACGCATTGACTACACGTCTGGAAGCACCGAAAGCCTTCATTGTTTCC
CAATGCTCGCCTAGACTTATGTGACATTTCTTGCAAAAATGAAGAAGACC
TTAGATTCATTCTCCATAGCCCTTAAGACAAAGCACATCTCATTTGGTGC
GATCGGGATATACCAATTGCACTTCAGCCCAAAAGTGAAGACCTTTTGCA
CCTGGGCCAAATGGACTAAAGATTAAGTTATGAGAAGGCCAGAACCCTAA
TTCCCTTGGAGGGTCTATGGAAGAGAGTCCTGCAACGGTATTGATCATTA
CGATTTTCATCCCACCTTTTGCATTCTTTCCTTATCCAAACAAAGTCTGG
TGATAATTAAAACCTGGGAAAG
FMO05919.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cals-RD | 6077 | CG11059-RD | 187..1283 | 8..1085 | 4725 | 96.7 | Plus |
| Cals-RC | 3696 | CG11059-RC | 184..1280 | 8..1085 | 4725 | 96.7 | Plus |
| Cals-RB | 3872 | CG11059-RB | 187..1283 | 8..1085 | 4725 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1120106..1120613 | 769..260 | 2435 | 99.4 | Minus |
| 4 | 1348131 | 4 | 1120659..1120803 | 266..122 | 725 | 100 | Minus |
| 4 | 1348131 | 4 | 1121459..1121574 | 123..8 | 580 | 100 | Minus |
| 4 | 1348131 | 4 | 1119937..1120048 | 877..769 | 410 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:35 has no hits.
FMO05919.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:37 Download gff for
FMO05919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RA | 178..1155 | 1..972 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:56 Download gff for
FMO05919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cals-RB | 173..1150 | 1..972 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:09 Download gff for
FMO05919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cals-RB | 181..1158 | 1..972 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:09 Download gff for
FMO05919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1121459..1121577 | 1..123 | 96 | | Minus |
| 4 | 1120659..1120801 | 124..266 | 100 | <- | Minus |
| 4 | 1119937..1120047 | 770..877 | 97 | <- | Minus |
| 4 | 1120106..1120606 | 267..769 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:37 Download gff for
FMO05919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1140563..1140673 | 770..877 | 97 | <- | Minus |
| arm_4 | 1140732..1141232 | 267..769 | 99 | <- | Minus |
| arm_4 | 1141285..1141427 | 124..266 | 100 | <- | Minus |
| arm_4 | 1142085..1142203 | 1..123 | 96 | | Minus |
