FMO05920.5prime Sequence
1009 bp (954 high quality bases) assembled on 2008-09-15
> FMO05920.5prime
CAGTCGACATGGCGGAGAACAAAGACGTCAGCCAGGTGCTAAACACCACA
CCCGACCAGGTGGTCATCAATCGTGCCCCGCCCACCGGACTAGCGCCCTT
GAGGCACAGCCAACTCTCTGATAGCGGAGCGGAGAGCTGCTACGAGGGCG
ATGAGCAGGCACGGCTCATCCGGTCCTCATCGTCGCGGGCGCACAAGTTC
ATCATAATACCGGCCACGCCAGGAACACCGCCGGGAAGCGGTGCGGTAGC
AGGACCACTTCCCTTTCGCCAGACCAGCTCAACCACATCGCTGGCGGCCA
TGGCAGCTGCGCTGCACAAACAGTCTCCACTGCGCCATACATCGGTGCGA
ACCAGGCCCAGTTCGGAGGTATTGCAACCGGGCCAGGTGCTCGCCAATCA
GCCAACGGCAGCTGTATCCACCTCCACGGTGACCTTCACCATTGACGACT
GCAATGAAGAAGGCGATGCCATTCCTGCTGCAGCTTCAGTTCCAGCTCCC
GTGACCATGCCCGCCATCTCACCCACGCCGGCCACCTTGACCTGCACCAC
CACCACCACCATGGCCGGTGATTCGGTGGCCGTCTCGCCGCTCAGCATGG
AGCTGAAAGTCGCGGTTAGGCAGCCATCACAGCAGCATGCGCTCCGTAGT
CTCAGGTTATCTTCCAGGCCTGAGCGACAGTATCGGCAATCTGGTTGGAG
GCGTATCGATGGCCACTTCCGGATTACAGGCCCCCAATCCCGCTCTACAT
GCAACCACAGGCCTCGCTGAGCGGCAGTTCCTATCATTTCCACGAACTGG
CCGGCAACCAGATCTACTCCGATGTGACCTCCGTTCGCTCGCTGGCCTCA
TTGGCATTGGGTCGACGGATGGGCGCAAGCTGGTCATCCGGTGAGTGCCA
CCCCCGCCAACAAGCTGGTTCGACATGGCCATCCCCAACGCCACACCCCT
GGGGGTGGATGACTATGACGCTACTTGGAATTGTCGGATGAGACCGCCCA
ACCTTAGCC
FMO05920.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ine-RE | 3458 | CG15444-RE | 523..1517 | 9..1000 | 4585 | 97.9 | Plus |
| ine-RB | 3664 | CG15444-RB | 699..1693 | 9..1000 | 4585 | 97.9 | Plus |
| ine-RF | 3436 | CG15444-RF | 501..1495 | 9..1000 | 4585 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4474329..4474977 | 658..9 | 3200 | 99.8 | Minus |
| 2L | 23513712 | 2L | 4473704..4473979 | 928..653 | 1130 | 97.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:11 has no hits.
FMO05920.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:47 Download gff for
FMO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 691..1678 | 1..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:57 Download gff for
FMO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 693..1680 | 1..985 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:55 Download gff for
FMO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ine-RB | 691..1678 | 1..985 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:55 Download gff for
FMO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4472140..4472158 | 945..963 | 100 | <- | Minus |
| 2L | 4473685..4473976 | 656..944 | 95 | <- | Minus |
| 2L | 4474332..4474984 | 1..655 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:47 Download gff for
FMO05920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4472140..4472158 | 945..963 | 100 | <- | Minus |
| arm_2L | 4473685..4473976 | 656..944 | 95 | <- | Minus |
| arm_2L | 4474332..4474984 | 1..655 | 99 | | Minus |
