FMO05921.5prime Sequence
742 bp (-58 high quality bases) assembled on 2008-09-15
> FMO05921.5prime
CCATCAAACGAAGTTATCAGTCGACATGGCCGAAAAGAATGAGTACATCG
AATTACCTTGGACCATGAACTCCTCCAGCGGCGATGACGAGGCGCCGAAG
GATCCGCGCACTGGCGGCGAGGATTTTACGCAACAATTTACAGAGAATGA
TTTCGAGGTGACTCCGCCGGCACAGCGAGTTCAATTCATACTTGGCGAGG
ATGTGGACGATGGCACACACGTATCGCATCCCCTGTTTTCGGAAATGGGG
ATGCTGGTCAAGGAGGGCGACGAGATCGAGTGGAAGGAGACAGCGCGATG
GATCAAATTCGAGGAGGATGTGGAGGAGGGTGGCAATCGATGGTCGAAGC
CGCACGTGGCCACGCTCTCCCTGCACTCCCTGTTCGAGCTGCGTCGCCTG
CTGGTCAATGGCAGCGTGATGCTGGACATGGAGGCCCAAAATCTGGAGGT
GATGGCCGATCTCGTGTGCGATCACATGGTCAGTGCGGGAACATTGCCGC
CCGGTGTAAAGGATAAGGTCAAGGACGCGCTCCTGCGACGACATCGGCAT
CAGCACGAGTATGCCAAAAAGACGCGACTGCCAATTATTCGATCCCTGGC
CGATATGCGCAATCACTCGTCATCAAAAAGAAAAAATCTAATTTCTAAAC
ACTCGCGACCCGCACAAAACCTGTCATCGATCACAGAGGACATGGTCAAG
AGTTCCCAGTAACCAGTCGATGGCAGGCCAGAAAGCGGAACG
FMO05921.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ndae1-RA | 3839 | CG42253-RA | 294..1010 | 26..742 | 3480 | 99.3 | Plus |
| Ndae1-RJ | 3735 | CG42253-RJ | 294..897 | 26..629 | 3020 | 100 | Plus |
| Ndae1-RH | 4232 | CG42253-RH | 294..897 | 26..629 | 3020 | 100 | Plus |
| Ndae1-RJ | 3735 | CG42253-RJ | 1066..1178 | 629..742 | 485 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7234526..7234998 | 630..158 | 2365 | 100 | Minus |
| 2L | 23513712 | 2L | 7237687..7237790 | 158..55 | 520 | 100 | Minus |
| 2L | 23513712 | 2L | 7231071..7231183 | 742..629 | 410 | 96.5 | Minus |
| 3L | 28110227 | 3L | 9780810..9780930 | 277..397 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:45 has no hits.
FMO05921.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:43 Download gff for
FMO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 291..1010 | 20..742 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:59 Download gff for
FMO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 288..1007 | 20..742 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:14 Download gff for
FMO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ndae1-RA | 291..1010 | 20..742 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:14 Download gff for
FMO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7231071..7231183 | 630..742 | 95 | <- | Minus |
| 2L | 7234527..7234997 | 159..629 | 100 | <- | Minus |
| 2L | 7237687..7237790 | 55..158 | 100 | <- | Minus |
| 2L | 7240182..7240213 | 20..54 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:43 Download gff for
FMO05921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7231071..7231183 | 630..742 | 95 | <- | Minus |
| arm_2L | 7234527..7234997 | 159..629 | 100 | <- | Minus |
| arm_2L | 7237687..7237790 | 55..158 | 100 | <- | Minus |
| arm_2L | 7240182..7240213 | 20..54 | 91 | | Minus |
