FMO05922.5prime Sequence
1101 bp (895 high quality bases) assembled on 2008-09-15
> FMO05922.5prime
CAGTCGACATGATGGGCACTAAGCATCGAAACTCGCATGTCAATGGCAGC
ATTAAGTCATCATCATCGCTGCGATCGAGCAGCAAATCCTTTCAAGCAAA
AATGGATCTGATGTCCGAAAGGCTGTACGATGTCGTGAAAAGTGGATCGA
TGGTGAAAAGGGCTCAAAACAAGAAGCGTTTCACCCCCGTGAATTACAAA
CATCGATGGTTTGAGTTGACCAAGCGAACTTTCAGCTACTTCGATGTGGA
AAATGTGGAGCGGAGACGCGAACGTGGTCGCATTCATTTGAAGGGCGTTC
GCCTGGTGGAGGAGGCGACGGTCAGTGGCGAGGGCGGCGATCCCTTTGCA
CCGGATGGTTATCCGTTCCAAGTGGGCTACTGTGAGATCTCTGCGTCGGC
CAATTCGCATCAGCTGGAGAACGGCAACGGCGGTGGTAGTGGCGTTGGAA
TCGAGGGTCAGCAGAGTGGACGAGCGGTGCCACAGTACACACTCTACGTG
ATCGCCAACAGCGAAAAGGAGCGCAGCGAGTGGATCCGCGCCATCCGCCA
AGTTTGTGAGGATAGTAATACTCCAAAATCGTATCGCTATCATCCGGGCT
TGTGGTCTGGAAAGAAGTGGAGCTGCTGCAAGGGATTATCTCGAACCACA
TTTGGTTGCAGAGCAGCCGCCCATTGGCGTGAGGCCAACAATAATTCAAG
CAACGGCAGTTCTCCAGCCCAGAATTCAACGCGCAGCATCAGTCCCAACA
GCTCCACGACCAACAGTCAGTTTAGCTTGCAGCACAACAGCTCGGGGGAG
TCTCGGCGGAGGAGTGGGCGGCGGATTGGGAGGCGGAGGCAGCCTTTGGC
CTAAGCGGCGGAGGAGGAGGTGGCGGCAGTTGCCGCCCACATCGCTACAG
CCTCATCCTCGCTGACACTTTCAGCAGTCCCCAACTCTATTGAGACGGCA
ACGGACTCTAATGGAAGGCCATATTGCCTGGGCGGTATACCCACTCCCGG
AACACAATTCCAAAGCAAGGAACAACTCCACTTTTGTCAGGCTGGGGGTG
GCTCTCAATCATTCAGGGCCTCGAAGGCGGGGATTTATGCTAGGAAAAAA
T
FMO05922.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Btk29A-RE | 4785 | CG8049-RE | 260..1353 | 9..1098 | 4855 | 97.2 | Plus |
| Btk29A-RD | 3674 | CG8049-RD | 281..1374 | 9..1098 | 4855 | 97.2 | Plus |
| Btk29A-RB | 3420 | CG8049-RB | 593..1686 | 9..1098 | 4855 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8298071..8298322 | 260..9 | 1260 | 100 | Minus |
| 2L | 23513712 | 2L | 8283869..8284064 | 552..357 | 980 | 100 | Minus |
| 2L | 23513712 | 2L | 8262476..8262680 | 905..700 | 870 | 98.1 | Minus |
| 2L | 23513712 | 2L | 8283408..8283557 | 700..551 | 735 | 99.3 | Minus |
| 2L | 23513712 | 2L | 8284124..8284222 | 357..259 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6824..6934 | 686..802 | 121 | 65.9 | Plus |
FMO05922.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:14 Download gff for
FMO05922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RB | 584..1690 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:25 Download gff for
FMO05922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RE | 491..1597 | 1..1101 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:24 Download gff for
FMO05922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Btk29A-RB | 584..1690 | 1..1101 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:24 Download gff for
FMO05922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8283869..8284064 | 357..552 | 100 | <- | Minus |
| 2L | 8284125..8284220 | 261..356 | 100 | <- | Minus |
| 2L | 8298071..8298328 | 1..260 | 98 | | Minus |
| 2L | 8262475..8262680 | 700..905 | 97 | <- | Minus |
| 2L | 8283409..8283555 | 553..699 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:14 Download gff for
FMO05922.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8262475..8262680 | 700..905 | 97 | <- | Minus |
| arm_2L | 8283409..8283555 | 553..699 | 99 | <- | Minus |
| arm_2L | 8283869..8284064 | 357..552 | 100 | <- | Minus |
| arm_2L | 8284125..8284220 | 261..356 | 100 | <- | Minus |
| arm_2L | 8298071..8298328 | 1..260 | 98 | | Minus |
