FMO05923.5prime Sequence
1002 bp (922 high quality bases) assembled on 2008-09-15
> FMO05923.5prime
CAGTCGACATGGAACACCACGAATACAACGCGCAGTTGGACAACTACTTG
CAGAACCGCCTGGCCGAAAGTCTGCAAATTTGCGGATGCGCCGGCGAGCA
TAATCCTCATCTGGCAGACGCTACTGGGGGGAACGGCTGCGCTCCTGGCA
TTGCGCCCTCAAAGTCGGACGAAGTCGACGGGGAAGAAGACGAGGAGTGG
AAGTACATACACGAGGTGCGGCAGAGTGAAAAGCTTCAACAGGAAAAGCT
TCCACTGACAAAGGAAACCGGCAATGGCTTCGGGCCCGGACGGGACTCAG
ATAATCAAGTTCACGGAAACGGAGCTGCCGCTGTCTTCAATCTGTACGAA
GAGGACGTGGAAGTGATCAAGAACGATGGTGACTTCTCGACAAATTCTAA
CACCACTACTTCAACGGACGAGGTAGTTGCCAGGCAGGCCCAGGAGCCAA
ACCAGTTGCCGGAGCAGCTTCAACAGCAGCAGCAGATAGAATCACAAGGT
GTTCACGAGGATCCCCGTCAGGAAGATGAGGATGAGCACAGCTCCGTGGC
CACTACTTATGGAACAAGCAGTCTCAGTGAGAACAACTCCTCGCCTTTAG
ATCAGGAGGAGGTCGTTATGGTGGCCCAAACGGTTGGTCAAGAGCAGTTA
GTGGACTTCGACAACAAGGAAAACTCCTATTTTGTTAAAACCTGGAAAGA
AAACCACTCGCAGCTAAACCCCAATGCTGTGGCCTTTGTGCCTGGCGTTG
GCTCACAATCATCCTCTCCCCTTCCTGCTGCTGAAGATCCACTACCTGGT
GTTCAGCCCCCGCCCATTTCTACCGGGAGGGACCCTTGACGATTTGGTGG
CCGGAAGTCCGCGGAAAGAATTCGCCCGAATCAACATGGATGGTATTGCC
GTGCCCGACGAGCGGGAATTGACTTGAACGGATATGCGACCCACGAGTTG
GACAGGAATCGACACTTTTGGGGCGGACACTGGAAATGCAGTTGTTGACG
GT
FMO05923.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Map205-RC | 5818 | CG1483-RC | 446..1442 | 9..998 | 4630 | 98.3 | Plus |
| Map205-RB | 4733 | CG1483-RB | 446..1442 | 9..998 | 4630 | 98.3 | Plus |
| Map205-RA | 4243 | CG1483-RA | 446..1442 | 9..998 | 4630 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 32067000..32067996 | 998..9 | 4390 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-28 19:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6915 | 434..610 | 161 | 58.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1187 | 442..578 | 156 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2357 | 388..485 | 143 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6824 | 440..542 | 138 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2523 | 399..590 | 130 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2389 | 434..496 | 126 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1038..1138 | 389..485 | 126 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6862 | 434..539 | 124 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6925 | 441..589 | 116 | 55.6 | Plus |
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 4386..4451 | 426..491 | 114 | 63.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1094..1158 | 432..496 | 109 | 63.1 | Plus |
FMO05923.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:49 Download gff for
FMO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RA | 443..1447 | 2..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:42 Download gff for
FMO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RB | 442..1446 | 2..1002 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:50 Download gff for
FMO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Map205-RA | 443..1447 | 2..1002 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:50 Download gff for
FMO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 32066995..32067999 | 2..1002 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:49 Download gff for
FMO05923.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27892717..27893721 | 2..1002 | 97 | | Minus |
