FMO05925.5prime Sequence
1156 bp (966 high quality bases) assembled on 2008-09-15
> FMO05925.5prime
GAAGTTATCAGTCGACATGCAGCATGGATCCTCCCGCATTCCGAAACAGG
AAGCTCTCCCGAATGCGATATCCGGGCCCGACTCCAGCAATTGGACTTCG
CTGCACGAGGCGGTAGCCGCCGGAGATGATCGCCGGGTGGAGGGTCTCCT
GTTCAGCAATGCTGATCGACTGGCCAGGGAATCCGTGCAGGGGAATACCC
CGCTCCATGAGGCCGCCAGTCGGGGGTTCAGTCGCTGCGTGAAATTGATC
TGCACGCCCCCCACGCCACCCGCTTCCTCGGGGGTGGGAAAAGCAGCAAA
GGGACAGAAGGACAAAGACAAGGATAAGAACAAGGGCAGAGTGAAGGTGG
CCCACCAGACCATCGAAGCCCTACACAATAGCGCCCTGGGTATTGCCAAC
AACGAAGGGTTGTCCGCCCTGCACTTGGCCGCTCAAAATGGTCACAATCA
GAGCTCTAGGGAGCTACTGCTGGCCGGCGCCGATCCCGATGTCCGGAATA
ATTATGGAGATACTCCGCTGCACACCGCCTGCAGATATGGACATGCAGGA
GTCTCCCGGATCCTGCTCTCCGCCCTTTGCGATCCGAATAAAACAAATCT
GAACGGCGACACCGCTTTGCACATCACCTGTGCCATGGGTCGCAGGAAGC
TGACAAGGATTCTCCTAGAGGCAGATGCTCGGCTGGGCATTAAAAACGCA
CAAGGCGACTGCCCCATGCACATAGCGATCAGGAAGAACTACCGTGAAAT
CATCGAGATCCTGAACACGCCGAAGAAGATACGGAATCGCAAGGAGAAAC
CCAAGGAGGGCGGCAGCAGATCGGACAAGGACAGAGATCGTGAAAGGGAT
GTGGTGGACAAGGGTATCACTGGTCACCCTATGGCTGTCACTTACTTTCC
CGATCCGCGTGCTTTCCTTCACCAAAACTGGAGACACTGCCCAAGGAGCC
ACTTAGTCGGGGGAGCAATACTTCCTGGATTTGGCTGGTCATATTCACAA
GGGTCCCGGTCAGCGTGGGCCACCAATGCTATTGCGGTTCCTCTTTCGGT
CCATTTGAAAACACTAAATTGCCATTCGAAAGAGAGTTTGAAGAAAACGT
TCCAAAACAAAGGAACGCTAAGTCACAGGTTCAGGGCTTGCATCAGACAA
CGATCG
FMO05925.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgo-RB | 3539 | CG12342-RB | 597..1719 | 17..1135 | 5100 | 97.6 | Plus |
| dgo-RA | 3142 | CG12342-RA | 200..1322 | 17..1135 | 5100 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10817932..10818493 | 1063..503 | 2420 | 97.3 | Minus |
| 2R | 25286936 | 2R | 10818549..10818975 | 502..76 | 2135 | 100 | Minus |
| 2R | 25286936 | 2R | 10819041..10819100 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:25 has no hits.
FMO05925.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:24 Download gff for
FMO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1322 | 17..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:43 Download gff for
FMO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RB | 575..1708 | 5..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:57 Download gff for
FMO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgo-RA | 200..1322 | 17..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:57 Download gff for
FMO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10819041..10819110 | 5..76 | 93 | | Minus |
| 2R | 10817857..10818493 | 503..1135 | 95 | <- | Minus |
| 2R | 10818549..10818974 | 77..502 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:24 Download gff for
FMO05925.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6706546..6706615 | 5..76 | 93 | | Minus |
| arm_2R | 6705362..6705998 | 503..1135 | 95 | <- | Minus |
| arm_2R | 6706054..6706479 | 77..502 | 100 | <- | Minus |
