FMO05926.5prime Sequence
622 bp (622 high quality bases) assembled on 2008-09-15
> FMO05926.5prime
GTAGTGTGAGCGAGACAGCTGCGGACTACGAGAACACCTGGAACTTCTAC
TACGAGCGTCCCTGTTGCACTGGAAACGATCAGGGGAACAACAATTACGG
GAAACACGGCGCAGATCATGTGCGGGAGTTCAACTGCGGCAAGCTGTACT
ATCGTACATTCCATATGAACGAAGATCGAGATACGCTCTATGTGGGAGCC
ATGGATCGCGTATTCCGTGTGAACCTGCAAAATATCTCCTCATCCAATTG
TAATCGGGATGTGATCAACTTGGAGCCAACACGGGATGATGTGGTTAGCT
GCGTCTCCAAAGGCAAAAGTCAGATCTTCGACTGCAAGAACCATGTGCGT
GTCATCCAGTCAATGGACCAGGGGGATAGGCTCTATGTATGCGGCACCAA
CGCCCACAATCCCAAGGATTATGTTATCTATGCGAATCTAACCCACCTGC
CGCGCTCGGAATATGTGATTGGCGTGGGTCTGGGCATTGCCAAGTGCCCC
TACGATCCCCTCGACACTCAACTGCGATTTATGTGGAGAATGGCAATCCG
GGTGGTCTGCCCGGTTTGTACTCCGGCACCAATGCGGAGTTCACCAAGGC
GGATACGGTTATTTTCCGCACT
FMO05926.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-2a-RE | 3440 | CG4700-RE | 290..912 | 1..622 | 3075 | 99.7 | Plus |
| Sema-2a-RA | 3580 | CG4700-RA | 430..1052 | 1..622 | 3075 | 99.7 | Plus |
| Sema-2a-RB | 3481 | CG4700-RB | 331..953 | 1..622 | 3075 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16528899..16529036 | 432..568 | 640 | 99.3 | Plus |
| 2R | 25286936 | 2R | 16517228..16517341 | 1..114 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 16528539..16528650 | 321..432 | 560 | 100 | Plus |
| 2R | 25286936 | 2R | 16525371..16525462 | 112..203 | 460 | 100 | Plus |
| 2R | 25286936 | 2R | 16527614..16527682 | 255..323 | 345 | 100 | Plus |
| 2R | 25286936 | 2R | 16529107..16529161 | 568..622 | 275 | 100 | Plus |
| 2R | 25286936 | 2R | 16525709..16525764 | 199..254 | 250 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:32 has no hits.
FMO05926.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:57 Download gff for
FMO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 331..953 | 1..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:12 Download gff for
FMO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RA | 374..996 | 1..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:06 Download gff for
FMO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-2a-RB | 331..953 | 1..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:06 Download gff for
FMO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16529108..16529161 | 569..622 | 100 | | Plus |
| 2R | 16517228..16517341 | 1..114 | 100 | -> | Plus |
| 2R | 16525374..16525461 | 115..202 | 100 | -> | Plus |
| 2R | 16525713..16525764 | 203..254 | 98 | -> | Plus |
| 2R | 16527614..16527682 | 255..323 | 100 | -> | Plus |
| 2R | 16528542..16528649 | 324..431 | 100 | -> | Plus |
| 2R | 16528899..16529036 | 432..568 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:57 Download gff for
FMO05926.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12404733..12404846 | 1..114 | 100 | -> | Plus |
| arm_2R | 12412879..12412966 | 115..202 | 100 | -> | Plus |
| arm_2R | 12413218..12413269 | 203..254 | 98 | -> | Plus |
| arm_2R | 12415119..12415187 | 255..323 | 100 | -> | Plus |
| arm_2R | 12416047..12416154 | 324..431 | 100 | -> | Plus |
| arm_2R | 12416404..12416541 | 432..568 | 99 | -> | Plus |
| arm_2R | 12416613..12416666 | 569..622 | 100 | | Plus |
