FMO05927.5prime Sequence
1152 bp (993 high quality bases) assembled on 2008-09-15
> FMO05927.5prime
CAGTCGACATGTACAACTCGGCCAAGCAGCTGCAGCGCGTGCTGACAGCG
CGCGAGATTCGTAAAACCTTTTTGGATCATTTCACCGTCAATCATGGCCA
CAAGTTCGTTCGCTCCAGCCCGGTGGTGCCCTTTTGCGATCCCACTGTGG
CTTTCGTTAACGCGGGCATGAATCAGTTCAAGTCGGTGTTCCTGGGCACA
GCAGCGGCGCCACACAAGCGGGTTGTCAACTCCCAGAAGTGCGTCCGCGT
TGGGGGAAAGCACAATGATCTCTCCGTGGTGGGCACGGATGGCTATCATC
ACACGTTCTTTGAGATGCTGGGCAACTGGTCCTTTGGGGATTACTTCAAG
CGGGAGGCGTGTGCAATGGCCCTGGAGCTGCTCCGTGGTCCCTACAACAT
TGATCCAGGTCGTCTATACGTCACATACTTTGCTGGCGACAAGGTGCTGG
GCATTCCAGCCGATCTGGAGTGTTTCGAGATCTGGAGGAGCCTGGGCTTT
CCCGCCTCGCGAATACTGCCCTTTGGCTGCGCCGACAATTTTTGGGAAAT
GGGCGCTACAGGGCCGTGTGGTCCCTGCACCGAAATCCACATAGATCATC
GCCCGGATTTGGGCAGCGTGGAGCAGCGAGCCAAGTTGGTGAACGCAGGT
CGTTCCGATCTCACAGAGCTTTGGAATCTTGTCTTTATACAGTACAATCG
TCATGCCGATGGCAGCATCTCTCAATTGCCCGCTCATCATGTGGACACCG
GCATGGGGTTTTGAGCGGCTAACGGCTGTGCTTCAGAATAAGTCTTCTAA
CTATGATACGGACTTGTTCACGCCGAAATTTGATGGCATCCAGCAAGCGG
CCAAGACTCCGGTTTACAGTGGCAGCTTTCCCGGATGGTGGAATGCAGCA
GTACTCGCACAGCTATAGGATACTAGCCGATCATGCACGCATGGTGACCG
CCTGTTTGGCCGACGCATGCTTCCAAATCAAATCAGAATTGCGTCCGTGC
TGCGCAAGCTCTCACATTTCGGAGCATGTGTTGCCACGACAATTGCTGAC
CACCTAGTTCCCTTTGTGTGAAAACCTGGGAAGCTTCGAGATGCCGCTAC
GACAGGGTGTTATCCACTTATCTGCCCAGACAGGAAGGCTCAAGAATCTA
GA
FMO05927.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-ala-m-RA | 3233 | CG4633-RA | 97..1168 | 8..1068 | 4905 | 98 | Plus |
| Aats-ala-RA | 3153 | CG13391-RA | 302..425 | 227..350 | 275 | 81.5 | Plus |
| Aats-ala-RB | 3204 | CG13391-RB | 353..476 | 227..350 | 275 | 81.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5147121..5147405 | 700..982 | 1095 | 96.2 | Plus |
| 3L | 28110227 | 3L | 5146857..5147061 | 496..700 | 1025 | 100 | Plus |
| 3L | 28110227 | 3L | 5146423..5146598 | 175..350 | 880 | 100 | Plus |
| 3L | 28110227 | 3L | 5146194..5146362 | 8..176 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 5146656..5146803 | 349..496 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 8381113..8381236 | 350..227 | 275 | 81.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:59 has no hits.
FMO05927.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:51 Download gff for
FMO05927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ala-m-RA | 91..1168 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:46 Download gff for
FMO05927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ala-m-RA | 84..1161 | 1..1068 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:18 Download gff for
FMO05927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-ala-m-RA | 91..1168 | 1..1068 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:18 Download gff for
FMO05927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5146425..5146598 | 177..350 | 100 | -> | Plus |
| 3L | 5146658..5146803 | 351..496 | 100 | -> | Plus |
| 3L | 5146858..5147061 | 497..700 | 100 | -> | Plus |
| 3L | 5147122..5147406 | 701..982 | 96 | -> | Plus |
| 3L | 5146188..5146362 | 1..176 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:51 Download gff for
FMO05927.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5139288..5139462 | 1..176 | 98 | -> | Plus |
| arm_3L | 5139525..5139698 | 177..350 | 100 | -> | Plus |
| arm_3L | 5139758..5139903 | 351..496 | 100 | -> | Plus |
| arm_3L | 5139958..5140161 | 497..700 | 100 | -> | Plus |
| arm_3L | 5140222..5140506 | 701..982 | 96 | -> | Plus |
