FMO05928.5prime Sequence
1025 bp (1000 high quality bases) assembled on 2008-09-15
> FMO05928.5prime
CAGTCGACATGTTGGCGGTTAAGAACTTCTTCCTGCCGGAGAGGGCAAAA
GCTCCGGAGACTCCACAACGATTCTCCCGGATGCCGGAGGCCTTTCTCCG
CTCCATCCGGAGACGATCCCTGAGGGTCAAGAGGGCCAAGAGTCTGGTGG
TGCCCGATCGCAGCGAGAAACGTAAATCAGATTCGTTTGTGAACAGTCAG
GAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCTGGGAATCGTCGG
TTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCTATCTCACCGGAT
CCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTCAAAAAGGAGGTC
TTCATCGATGGCCAGAGCTACTTGCTGCTCATTCGCGACGAGGGTGGAGC
TCCCGAAATGCAGTTCGCTGGCTGGGTGGATGCGGTAATCTTTGTGTTCA
GCCTGGAGAACGAGGGCAGCTTCAATACCGTCTATAACTACTATACGAAA
ATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGATATTGGTCGGAAC
GCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTGACGACACCCGTG
CCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTACTACGAGACCTGC
GCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGGATGCCTGTCAAAA
GATCCTCTCGCAGCGCCTGCCTTTGCCACCACAGGTGCAACCGGCGAGAC
CCACGACTCCGCAGGGCAATCGCCTGGGATTGGCTCCCTACCAGGCGCCC
ACCAATGGACAACGTGCCAGCACCGCTACCACTGCGAATGAGTGCGGATT
TCGCACAGGCGGAGCAGAAACTTTGGTCGCTGCAAGCGGCCAGCAGTTCA
CCATAAACAAAATACAACATCTCCAATTCCATTCCGGAGCGGCCAATTCG
CTGCAGGTGATTGCTCCCAGGTGCAGTTGCGCGATCACTGATCTGGCGCC
CACACCGGGTAAGAGCTGCCCACAC
FMO05928.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CenG1A-RA | 3869 | CG31811-RA | 577..1605 | 7..1025 | 4775 | 98.3 | Plus |
| CenG1A-RB | 4444 | CG31811-RB | 868..1724 | 179..1025 | 3915 | 97.9 | Plus |
| CenG1A-RC | 3516 | CG31811-RC | 172..796 | 411..1025 | 2755 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13891297..13891532 | 178..413 | 1180 | 100 | Plus |
| 2L | 23513712 | 2L | 13895456..13895801 | 690..1025 | 1120 | 93.6 | Plus |
| 2L | 23513712 | 2L | 13879533..13879706 | 7..180 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 13895026..13895170 | 411..555 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 13895253..13895389 | 554..690 | 685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:31 has no hits.
FMO05928.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:16 Download gff for
FMO05928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RA | 572..1605 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:11 Download gff for
FMO05928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cenG1A-RA | 564..1597 | 1..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:13 Download gff for
FMO05928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CenG1A-RA | 572..1605 | 1..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:13 Download gff for
FMO05928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13895457..13895801 | 691..1025 | 94 | | Plus |
| 2L | 13879528..13879706 | 1..180 | 98 | -> | Plus |
| 2L | 13891300..13891532 | 181..413 | 100 | -> | Plus |
| 2L | 13895029..13895170 | 414..555 | 100 | -> | Plus |
| 2L | 13895255..13895389 | 556..690 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:16 Download gff for
FMO05928.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13879528..13879706 | 1..180 | 98 | -> | Plus |
| arm_2L | 13891300..13891532 | 181..413 | 100 | -> | Plus |
| arm_2L | 13895029..13895170 | 414..555 | 100 | -> | Plus |
| arm_2L | 13895255..13895389 | 556..690 | 100 | -> | Plus |
| arm_2L | 13895457..13895801 | 691..1025 | 94 | | Plus |
