FMO05929.5prime Sequence
795 bp (795 high quality bases) assembled on 2008-09-15
> FMO05929.5prime
ACGTCGGAGGAGGCAGTGCAGCGACCGCTGCTAAGTTCCAGAATCGCTGC
GGATCGCCGCAGTTTGCCAGCGACTATCCGCATCCACATCCGCACCAGCA
TCCGCACCAGACGACATCGGTGGCGGTGCACAGTGCCCCGCCCGGAGTGA
GTGGTGGCTCCATAGCCAGCGGTGGGTCCATGTCCATGCGTCACGGCCAG
CGGGTGGTGGCCTCAGCCCATCAGCATCCCAGTCAGATGACCCTGAACCA
CGGCGGTATGGGCCACAACCACAACCACGGCATGGGCATGGCCATGGGAA
TGGGTCACAATCATGGACATGCAGCGGCCACCTTGGGCCATCCGCACTCG
CATTCGCACAACAACAGCAGCGGCAGCAGCAGCCACGGACATGTGGGCTC
GCATCTGATCTTCCCCGACGACATGGACAGCATCGAGTTCTGCATGCCGG
CGGCGCCCTCCTCCTCGTCCGCCTCCTCGCAGAACGGTCTCGGCGACCAG
TTGCTCTTGGGCAGCAGTCACGGCGAGGCGTTCACGGAGCGCCGAAGGAG
GGGTCACAGCCGGCGCAGCAATCACAAGATGGACGTGGAACAGCAAGTTA
AGTGGTCTCGCAAGAACATCGCCGCCCACCATGGAACGCTTCGAGCCACG
CCCAACACACAGTCCTCGTCGTCCACTTCATCGCTGGATAATGGATTTGC
AGCCGGCGTGATGACACCCAGTTGGCAGCAGTGCTATGGCCTCGCATGGC
GGTGGCGCCTCCCAACCCTCACTGCACGTGGCCTTTCAACCGGAG
FMO05929.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43759-RC | 6340 | CG43759-RC | 1088..1866 | 6..785 | 3740 | 98.8 | Plus |
| CG43759-RD | 4396 | CG43759-RD | 901..1679 | 6..785 | 3740 | 98.8 | Plus |
| CG43759-RB | 4583 | CG43759-RB | 1088..1866 | 6..785 | 3740 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19011094..19011683 | 6..595 | 2950 | 100 | Plus |
| X | 23542271 | X | 19011753..19011940 | 597..785 | 725 | 95.8 | Plus |
Blast to na_te.dros performed 2014-11-28 23:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1100..1148 | 339..386 | 134 | 77.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2369 | 338..388 | 131 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2421 | 321..386 | 129 | 70.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 904..1026 | 346..465 | 119 | 61.6 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12082..12204 | 346..465 | 119 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6705..6799 | 289..388 | 118 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1105 | 350..388 | 116 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1523..1551 | 358..386 | 109 | 86.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2486..2514 | 358..386 | 109 | 86.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2598..2646 | 339..386 | 107 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6815 | 359..383 | 107 | 92 | Plus |
FMO05929.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:21 Download gff for
FMO05929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43759-RA | 1085..1874 | 1..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:49 Download gff for
FMO05929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32541-RA | 1061..1850 | 1..795 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:34 Download gff for
FMO05929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43759-RB | 1085..1874 | 1..795 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:34 Download gff for
FMO05929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19011091..19011684 | 1..596 | 99 | -> | Plus |
| X | 19011753..19011948 | 597..795 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:21 Download gff for
FMO05929.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18905124..18905717 | 1..596 | 99 | -> | Plus |
| arm_X | 18905786..18905981 | 597..795 | 95 | | Plus |
