FMO05930.5prime Sequence
1142 bp (1000 high quality bases) assembled on 2008-09-15
> FMO05930.5prime
CAGTCGACATGGCTCTACTCCGTTCGCTGAGCGCCCAACGAACAGCCATC
AGTTTGGTCTACGGCCGTAATAGCAGCAAGTCGAGCAATTCCGTGGCCGT
CGCCGCCTGCCGGAGTTTCCATCAGCGCGGCAGCGGGAGCACCAGCATCG
CCGGAGAAGGAGCAGCATCGGAGTCCACGAGAGGAGTCAATGGAGCGCGC
TTCCTGCACAGCGGCGACCGGCCGCTGCAGGCCTCCACTCTGGTCCAACC
GGAGGTGGTCTCCAGCGAGACGGTGAAGCGATCGATGAAGCAGGAGTCGT
CCCAGGAAAAGAACCCCTCGCCCGCTGGCTCGCCGCAGAGGGATCCCCTG
GACGTGAGCTTTAATGATCCGATTGCTGCTTTCAAGAGCAAGACCACTGG
AGAGCTAATACGCGCCTATCTCGTCTACATGATATGTTCCAGCGAGAAGC
TGGTCGAGCACAACATGACGCTTATGAAATGGTCAAAGAACGTATTGGGT
CAACGGTTATTTACATTATTGATGAAGGCGACCTTCTATGGCCACTTTGT
CGCCGGCGAGGATCAGATCAAGATCATACCCACACTGGAAAGGCTAAGAT
CCTTTGGCGTTAAGCCGATTCTCGATTATTCCGTTGAGGAGGATATCACC
CAGGGAGGAGGCCGAGAAACGTGAAGTTGAATCTTCCGTCTCCAGTGCAG
GCGACAAAAAGGAGGAGGGCAGCATGCCGCAGTACCATGTGGACAAGTCC
TTTGCGGGATCGGCGCTACAAGGTCAGCAGTGCTCGCACCTACTTCTACT
TGAACGAGGCCACCTGCGAGCGGAACATGGAGATCTTCATCAAGTGTCTG
GAGCTGTTTCGGGCGCCACCTTTGGAACTGGCATCACGCCATTAAACTCA
CCGCCTTGGCCGTCCACAATTGCTGCTGCAACTGTCGAGGTATCATGCGC
AACCGCAGTACATGGAGGATATGGTGGGCGGTAGGTCATGTGCTGACTCA
CACAGACATCAAGGATTCTCGAAAGTATTACGGCTCGCTGGGCGACAATA
AGGACGTCAGGAGTTCTGGAACATGTACCGTCGGATTAGGAGGAATTTTG
CATTGTGTCCCTGGACGCATGTTGACAAGAACTGCGACCTGA
FMO05930.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slgA-RL | 3359 | CG1417-RL | 96..1203 | 9..1104 | 4940 | 97.4 | Plus |
| slgA-RK | 3404 | CG1417-RK | 141..1248 | 9..1104 | 4940 | 97.4 | Plus |
| slgA-RJ | 3472 | CG1417-RJ | 209..1316 | 9..1104 | 4940 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21376205..21376666 | 9..470 | 2310 | 100 | Plus |
| X | 23542271 | X | 21380882..21381064 | 681..863 | 820 | 98.9 | Plus |
| X | 23542271 | X | 21379587..21379710 | 470..593 | 620 | 100 | Plus |
| X | 23542271 | X | 21380649..21380737 | 591..680 | 400 | 98.9 | Plus |
| X | 23542271 | X | 21382179..21382244 | 862..925 | 215 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:54 has no hits.
FMO05930.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:28 Download gff for
FMO05930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slgA-RJ | 217..1341 | 3..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:50 Download gff for
FMO05930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slgA-RF | 202..1326 | 3..1117 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:17 Download gff for
FMO05930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slgA-RJ | 206..1330 | 3..1117 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:17 Download gff for
FMO05930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21379588..21379709 | 471..592 | 100 | -> | Plus |
| X | 21380651..21380737 | 593..680 | 98 | -> | Plus |
| X | 21380882..21381063 | 681..862 | 98 | -> | Plus |
| X | 21382180..21382244 | 863..925 | 95 | -> | Plus |
| X | 21376202..21376666 | 3..470 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:28 Download gff for
FMO05930.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21251678..21251764 | 593..680 | 98 | -> | Plus |
| arm_X | 21251909..21252090 | 681..862 | 98 | -> | Plus |
| arm_X | 21253207..21253271 | 863..925 | 95 | -> | Plus |
| arm_X | 21247229..21247693 | 3..470 | 99 | -> | Plus |
| arm_X | 21250615..21250736 | 471..592 | 100 | -> | Plus |
