FMO05931.5prime Sequence
813 bp (813 high quality bases) assembled on 2008-09-15
> FMO05931.5prime
CAGTCGACATGTACCAGAGTGCCTGCCAGGCGGCCACTACGGGCTCCTGT
GTCCCGGGAACCGGTCAGCAGCCAGACAACGAGCGACAGTCGGCGCTGAT
CGCCCAACAACCCCCCACCGCGCCCGTGGAGCCAGATTACAGTGGCTTCG
ATATCGTTAAGGCCACCCAGTATGGTGCCATTGCCCGAGTACGGGAGCTG
GTTGAATCCGGCTGGGATGTCAATCAGCCGGACAGCGAAACGGTCACCCT
GCTTCATTGGGCGGCCATTAACAATCGTAGGGACATCATCCGGTACTTCC
TCGAGAAGGGCGCCACCGTGGATGCCGTGGGCGGCGAACTTAATGCCACG
CCCCTGCACTGGGCCACTCGACAGGGACATCTCGGCGCCGTTGTTCTGCT
AATGGCCGCTGGTGCAGATCCGAGAATCAGGGATGCGGAGGGTTGCTCCT
GCATACACATCGCCGCCCAGTTCGCCCACACCGCTCTAGTGGCCTATTTC
ATAGCCAAGGGCGTGGACCCGGATCTCCAGGATCGAGGCGGAATGACGGC
GCTGATGTGGGCAGCATGGAAGGTTTGCGCACTGGATCCAGTGCGCTTGC
TGCTGACCCTTGGAGCGAACCCCGCCATGGTTGATTATACGCATGGAAAA
CACGGCCCTGCATTGGGCTATCCTGGCCCGCAATGCCCGGCCATTTTCCA
CACTCGTGCTCAAGTCAAAGGCCTCGTTGGATGTACCCAATCTGCGGGGG
TGAGACACCGCTCTCCATGCTAGAATCCCAGACGGGAGCATTTTGGATAG
GAGCGAAAGGTAA
FMO05931.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hip14-RC | 3910 | CG6017-RC | 390..1191 | 9..813 | 3875 | 99.1 | Plus |
| Hip14-RB | 3086 | CG6017-RB | 390..1191 | 9..813 | 3875 | 99.1 | Plus |
| Hip14-RA | 3086 | CG6017-RA | 390..1191 | 9..813 | 3875 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15988625..15989190 | 9..574 | 2830 | 100 | Plus |
| 3L | 28110227 | 3L | 15989383..15989618 | 570..807 | 985 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:58:02 has no hits.
FMO05931.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:23 Download gff for
FMO05931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 385..1191 | 1..813 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:49 Download gff for
FMO05931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6017-RA | 381..1185 | 1..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:08 Download gff for
FMO05931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hip14-RA | 385..1191 | 1..813 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:08 Download gff for
FMO05931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15988620..15989188 | 1..572 | 99 | -> | Plus |
| 3L | 15989386..15989623 | 573..813 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:23 Download gff for
FMO05931.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15981720..15982288 | 1..572 | 99 | -> | Plus |
| arm_3L | 15982486..15982723 | 573..813 | 97 | | Plus |
