FMO05936.5prime Sequence
1169 bp (934 high quality bases) assembled on 2008-09-15
> FMO05936.5prime
CAGTCGACATGGGCATCAACGTCAGCAGGACGGCCGACCTGGGGTCCAAC
CAGTGGCTCCAGCGCTTCGTGGGCCGCCAGCACATCGCCCACGATGACGA
GGCCTTCTGGAACGGGCTGCTCAACTACAACATTGTGCTGCCGGAGAACA
GTCAGGACCAGCTCAACCTGGACAGCCGGCTAGAGGCGCTGTGCCAGTCG
TTCATCGGCAATAACCTGAAGACGGGCAACTTTGGCTCCCTGGTGACCGT
GTTCCTGGAGAAGACCAGCGAGCTGCTGTCGCTGTCGGACCAGGAAAGCA
ACATGCACGTCTGGCAGACCTTCAACGCGCTCTTCATCATCCGCAGCCTG
GTCAAGTACATCAACGAGACGGGCTCTGAGTTCCAGCTGCTGCAGCACTT
TGAGGCTATGCCGAATGCAGAGCTGCTGCAAGCGGCATTGGAGCAGCAGC
AACAGACGCCGGCGGAGAGCGCCACCATTGCCATGGAGGCCACCGAACAG
TCGGCGGCGGCTGCGGTTCCAGTGATTGTGGACGGATCTAAGTTTGAGAC
CTTCATCGATGCCCTGGTGAACCCTAATCGTCGTGATTCCCGTCAAGGAG
TTCACCTACCACCTGCACCTAGAGGCCGTTAACATGCTGATCACCCTGCT
GTCAGTGCATCTGTTTGCCCAACAGCCCACGGACAAGTCCATCGTGTTCC
GGACGGTCTTCAAGTGTCAGCACGCAAACGTGCTGATGTCGGCACTGCTG
CATTTTGTGGCGCGTATTGTGGAGGTGCCGCACACCATGTTTGGGTCAGC
TCTGCTGGATCTTTGTCCTTGGGATCGCGGAGTCGCTGCTTTTCCATCTT
CACGTTCCGTAAGCAGCCAGACTTACTGAAAGCGGGCCAAGCACCCGGCG
GTGGAGAGCTCTCCAGCGATTCGTTACCCACTACCCACTGGCCAACCAGA
TCTGTTGCTGATCTGAATACTGACTTACCACTGCCCGCACAGGATAACGC
TATCGAAATAGCCTTTTCGTTTCGCCGATTAAGGATTCCCAAACAGGGAG
CGGTTCCCTTTCAAATTCGATTCTGGTGGGTAATGAAAAACATGTGGTAC
CTTCCTTATACATTCGGATAGGCACGCTGTGCTTGTCTTTTTCGTGCTGT
GTCTATGCCGAGACAGGAG
FMO05936.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8230-RA | 2781 | CG8230-RA | 74..1125 | 9..1051 | 4730 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8946179..8947052 | 1018..149 | 3770 | 97.5 | Minus |
| 2R | 25286936 | 2R | 8947129..8947271 | 151..9 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:44 has no hits.
FMO05936.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:47 Download gff for
FMO05936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 67..1110 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:05:42 Download gff for
FMO05936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 84..1127 | 1..1038 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:32 Download gff for
FMO05936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8230-RA | 67..1110 | 1..1038 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:32 Download gff for
FMO05936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8947129..8947275 | 1..151 | 97 | | Minus |
| 2R | 8946156..8947049 | 152..1038 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:47 Download gff for
FMO05936.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4834634..4834780 | 1..151 | 97 | | Minus |
| arm_2R | 4833661..4834554 | 152..1038 | 97 | <- | Minus |
