FMO05937.5prime Sequence
660 bp (-60 high quality bases) assembled on 2008-09-15
> FMO05937.5prime
AGAAGGTGCCTTACAGGTCTGGCGGACCCTGCCGGAGCGCATTCGTCAGG
ATCCCAGTCTAGCCTCCTTTCGCCAGGAGCACGAACGTCTGCATGGCGAT
GTGGACCAGCTGCACGCGGAGGAGTCGGAATTGCGTGTGCAGAATGGACA
CCACGAGGAGACGGCGCTGGCCAACCAGCCATTCACACAGATCGGGATCA
ATGTGACGAACGAGGCGGGTCAGGTGCGGGTGCTCGATGGCAGGGATCTG
GAGAATAACAACGATGATCAACACGACGAGGCCGAGCCGCATGCCAAGAG
TTTGATACGAAAGTATCTCATCTGGTTTAAGATAGCCATACTCCTGGTGG
TCTGGTGCGTCTTCACCGCCTTCCTGATGTCCAACAACGAGCATGTGGAC
CAACTGAGCCTCTTTAGTGTTCCTAGGAATAGCTCACCCAGAGTATTTCC
CATTGCCACCGCCAGTCTGCAGAGGATTGGCCTGGGCCTGCGCGGACCCT
TCCGCCTGCAGGAGAACGAACTGGCCATTAACGCGAGTGTTCCACTGCCC
CTGCTCCAGGTGCAGGTGATGCGCAGCTATTTCGATGGCGAGGGCATGGA
GATCTACATCGAGAACGCCAGCCAGTTGTGGGCAACTGGACGTGGTCTAT
CCCGATCTGA
FMO05937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hoe1-RJ | 3422 | CG12787-RJ | 481..1139 | 1..660 | 3245 | 99.5 | Plus |
hoe1-RI | 3462 | CG12787-RI | 682..1340 | 1..660 | 3245 | 99.5 | Plus |
hoe1-RC | 3340 | CG12787-RC | 399..1057 | 1..660 | 3245 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4911158..4911513 | 660..304 | 1705 | 99.2 | Minus |
2L | 23513712 | 2L | 4911722..4911868 | 244..98 | 735 | 100 | Minus |
2L | 23513712 | 2L | 4912672..4912769 | 98..1 | 490 | 100 | Minus |
2L | 23513712 | 2L | 4911581..4911645 | 304..240 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:35:53 has no hits.
FMO05937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:12 Download gff for
FMO05937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoe1-RA | 466..1123 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:56 Download gff for
FMO05937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoe1-RD | 713..1370 | 1..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:59 Download gff for
FMO05937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hoe1-RC | 399..1056 | 1..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:59 Download gff for
FMO05937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4911159..4911512 | 305..659 | 99 | <- | Minus |
2L | 4911581..4911641 | 244..304 | 100 | <- | Minus |
2L | 4911723..4911867 | 99..243 | 100 | <- | Minus |
2L | 4912672..4912769 | 1..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:12 Download gff for
FMO05937.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4911723..4911867 | 99..243 | 100 | <- | Minus |
arm_2L | 4912672..4912769 | 1..98 | 100 | | Minus |
arm_2L | 4911159..4911512 | 305..659 | 99 | <- | Minus |
arm_2L | 4911581..4911641 | 244..304 | 100 | <- | Minus |