FMO05938.5prime Sequence
488 bp (-67 high quality bases) assembled on 2008-09-15
> FMO05938.5prime
CAGTCGACATGAACCCAGCCGCTCAACTGCTGCGCATGCGCAGCGCTACC
GCATTTGGTAGCGCCGCAACGCGCTCCATCACGACGAACCGGCGCCAGCG
GACCACCAGTACCGCCAGCGCCCAGCGGGAGCGGACGCAGAGCGTCAGCG
AGACGGACAAGTTTCTGCACTACAGCCCCGAGGACGGCTACTACAAGACC
TCGCCCTTTGACCCCGTCACCATTCCCAACGTACCGCTGCATGAGTACGT
GTGGCGCGACTTCAAAAAGTGGGAGCGACGCACTGCAGCGGTTTGTGTGA
TCACCGATCGGCAGTACACTTTCGCTCAAATGCGTGATGCCAGCGCCGCT
TTTGCCGTTCGTCTGCAGACCAAATTCAATCTCCAAAAGCCCGACGTTTT
GGCCATCTGTCTGCCGAATCTTCCCGAGTATCCCATTGCCACATTGGGCG
CCATTGAGGCGGGACTGACGGAGACCACTGTGAATCCC
FMO05938.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pdgy-RC | 2980 | CG9009-RC | 596..1076 | 8..488 | 2375 | 99.6 | Plus |
| pdgy-RB | 3407 | CG9009-RB | 653..1133 | 8..488 | 2375 | 99.6 | Plus |
| pdgy-RD | 2780 | CG9009-RD | 396..876 | 8..488 | 2375 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14950316..14950600 | 292..8 | 1425 | 100 | Minus |
| X | 23542271 | X | 14946284..14946482 | 488..290 | 965 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:07 has no hits.
FMO05938.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:45 Download gff for
FMO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..876 | 1..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:58 Download gff for
FMO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9009-RA | 135..619 | 1..488 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:14 Download gff for
FMO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pdgy-RD | 392..876 | 1..488 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:14 Download gff for
FMO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14946284..14946481 | 291..488 | 98 | <- | Minus |
| X | 14950318..14950604 | 1..290 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:45 Download gff for
FMO05938.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14844351..14844637 | 1..290 | 98 | | Minus |
| arm_X | 14840317..14840514 | 291..488 | 98 | <- | Minus |
