FMO05939.5prime Sequence
725 bp (717 high quality bases) assembled on 2008-09-15
> FMO05939.5prime
CTTATCAGTCGACATGAGCTCCAAGAGCAGACCTTCATCGGCGGCGATGT
TAGTTAATGCGATACCCATGATACTGCTGATCACCTTATCCGGCCTGACG
ATCGTGGCAGGTTGGATGCCCGACGTGAAGCCTGATTTGCAAACAAAACA
AGACAAAGTCCTAGCCCATTTTATAGGCAACTCGACGGACTATTTCAAGA
TTTTGGACCACAACGATGAGTTTGTTCTAGTTGGTGCCAAGGACGTCATC
TACAATGTGAGCCTAAATGGCCTGAAGGAGATTGCGCGTCTGGAGTGGCA
CAGCACGGATGCGGACCGGGAGCTGTGTGCCCTAAAGGGGAAGCACGAGT
GGGATTGCCATAACTACCTTCGCGTCTATGCACTGCGTCCCAATGGCGAG
GTGCTGCTCTGCGGCACCAATTCGTATAAGCCGCGCTGTCGTCACTACAC
GCCGGTGGAAGTGTCATCCGAGGAGGCCGGCTCTGCTGGTCACGCCCATG
CCATGCGCTACGAAGTCTGCCGAGATGTGGAGGCCCAGGGCCTGTGCCCC
TACAGCCCCGCCCACAATAGCACGTACGCCTTCGCCGACGGGCATTTGTA
CAGCGCCACCGTGGCGGACTTTTCGGGTGGAGATCCTCTCATCTACAGGG
AGAACCTGCGTACCGAACAATATGATCTCAAGCAACTCAACCATCCGGAC
TTTGTTGGCGCCATCGAGCGCAACG
FMO05939.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sema-1b-RC | 3910 | CG6446-RC | 575..1286 | 14..725 | 3530 | 99.7 | Plus |
| Sema-1b-RB | 4262 | CG6446-RB | 479..1190 | 14..725 | 3530 | 99.7 | Plus |
| Sema-1b-RA | 4269 | CG6446-RA | 486..1197 | 14..725 | 3530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17676109..17676593 | 725..241 | 2395 | 99.6 | Minus |
| 2R | 25286936 | 2R | 17678272..17678404 | 146..14 | 665 | 100 | Minus |
| 2R | 25286936 | 2R | 17677825..17677919 | 241..147 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:10:43 has no hits.
FMO05939.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:34 Download gff for
FMO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1197 | 6..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:59 Download gff for
FMO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RB | 393..1111 | 6..725 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:02:13 Download gff for
FMO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sema-1b-RA | 479..1197 | 6..725 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:02:13 Download gff for
FMO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17676109..17676593 | 241..725 | 99 | <- | Minus |
| 2R | 17677826..17677919 | 147..240 | 100 | <- | Minus |
| 2R | 17678272..17678411 | 6..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:34 Download gff for
FMO05939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13563614..13564098 | 241..725 | 99 | <- | Minus |
| arm_2R | 13565331..13565424 | 147..240 | 100 | <- | Minus |
| arm_2R | 13565777..13565916 | 6..146 | 97 | | Minus |
