FMO05940.5prime Sequence
1113 bp (864 high quality bases) assembled on 2008-09-15
> FMO05940.5prime
CGATGTGGTCATACCATTCCATTCCATTTTCGAAATCGCATATCTGCACG
TAAATGTAACCTGTACATTGTATTATTGTTAAAACAGACCTCACACGAAA
GCGAACCAGATTCGCCACACCCCATTGGCGGAGGAGGGTCGTTGCATATG
TCGCAGTCGTACACCACCACTCCGTGCTACCGACCGCGTTCGTCATCCGT
GCCGCGTTTCACCTACGGCAGTATACCGCCTCGATCGGAGTCGCCCTTCG
GCACCGCTTCCTCCACGTGCTCCTCGCTACGCGGCGGCGTGGAGAGCGAT
GCTGGTATCTACCATCAGCGTCATCGGCCGGCGATCAGTCCGCCGGAGAC
GAGGGCCTTCCTCCACGAGGCGCTCGACGAGGTGTGCAGCGATTTCGAGC
GGACGCTGGAGCGGACTTCCGTAAAGCGACGCAAGTCTCCCTATGGAGCT
GGATCCCTGTCCATGGATCGGAATAACAACAAACTTAGCCTGAGCATCAG
CAATGGCCATGGCGCATTGAAGGAGCTCAAGAGTCATCGCCTGGGCAACA
GCACGTGGGATCGGCACTTTGATGTGGCAGATTCCTGCATTGGCGGCAAT
CAATCGCCCACGGGCACGCCGCGCCCCTTTCTGCGATCCAACACCCTTCC
TCTGCGACAGCGACCCAGTCCGGCGGAGGTCCAATATTGAAAGCTACGTG
CAGGCCACGGTGGCGGCCAATGCCAAGTCGCCCGGTGGAGCAGCTGGAGA
GCGCAAAAGTCTCCAGGTGCTCCGCCACCACCGCCTCCGAGGCGCCCCCA
CCTGTTGGCCACACGCCCCGGAAAACCCACTTTCAAGGAGGATCGACGCT
GGAAATGGGTCCGTAACAGCATCCCCTGCAGTCGCCAGTCATCTCGGAAC
CCGTCAGACTACGGCGATGCCATGCTCTGTTCCAGATTCGAAAACAATGG
CCCTGAGCTGAGCGTCTTAAGACTTGAAGGAGCAGGTGAAGTCATACCTG
ACTGGAGCTGGACTATTTCCTTCTCTCGGAAAACCAATTGCTGTGCAAAC
TGAAGAATGTATGCAAGTCAGCGGCATACCGCTTCCCGCCAAGTCGGAAC
TCAATGGCCCTCA
FMO05940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10249-RA | 4221 | CG10249-RA | 71..1193 | 5..1104 | 4535 | 95.1 | Plus |
| CG10249-RG | 5340 | CG10249-RG | 1271..2312 | 86..1104 | 4130 | 94.7 | Plus |
| CG10249-RD | 4880 | CG10249-RD | 811..1852 | 86..1104 | 4130 | 94.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14910224..14910799 | 580..5 | 2880 | 100 | Minus |
| 2R | 25286936 | 2R | 14905568..14905955 | 958..579 | 1155 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:36:03 has no hits.
FMO05940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:19 Download gff for
FMO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 68..1067 | 1..990 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:01 Download gff for
FMO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 68..1067 | 1..990 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:04 Download gff for
FMO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10249-RA | 68..1067 | 1..990 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:04 Download gff for
FMO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14905533..14905953 | 581..990 | 93 | <- | Minus |
| 2R | 14910224..14910801 | 1..580 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:19 Download gff for
FMO05940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10793038..10793458 | 581..990 | 93 | <- | Minus |
| arm_2R | 10797729..10798306 | 1..580 | 99 | | Minus |
