FMO05941.5prime Sequence
922 bp (891 high quality bases) assembled on 2008-09-15
> FMO05941.5prime
CAGTCGACATGACCGAGGACTGGCAGAGTCAAAAGTTTCGTCAGAATGTC
ATCTCCAAAATCCACGACTTATTGCCACCGAATGCGCAGGACCAGACTAA
AAATGCCGGCGTTATGGAGAACCACATATTTCGAAAGTCGCGTACTAAGG
ACGAGTATTTAGGTCTGGTAGCCAAGCTCTTTATGCATTACAAAGACATG
TCACGAAAGTCCCAGCAACAGCAGCAGCAGCAACAACAGCAGGGTGGCCC
GCCCCCAAATGCGGAAATGGGCGGCGGGCAGAATATGATGCAGGATCCAC
TGAACGCACTTCAGAATCTTGCCAGTCAAGGAAATCGCAATCCCCAGATG
ATGCCCATGGGCGCCGGAGGAGGAGCGCCAGTGCCCGGTGGCCCCGGAAC
TGCCTCTAACTTGCTACAATCCCTGAATCAGCAGCGCCCTGGACAGCAGC
AAATGCAGCCCATGTCAAATATCCGTGGCCAAATGCCCATGGGTGCCGGA
GGAGCTGGTGCCCAGCAGATGATGCAGGTTCAACAGATGCAGCAAGGTGG
GAATGCCCCCGGAGTGATGAACGTAATGGGCGCCGGCGGCGGGCAAAATC
AGGGACAGATTGTCGGTAATCCCCGGGCAGCAAATGGGCGTGGGCGTTGG
CATGCCTAACCAAATGGTAGGACCGGGACCGAACATGGACCCGCCGTTGG
CGGAGCTGGCGGACCAATGCTGCTCCAGGAGCAGGCGGACCCGGGCCAAA
TCAGATGCAGGGCGGACCTATGAACGTAAATGCCATGCAACAGATGCCTC
CCATGCACAGATTCACAAACCAATTGGGGATGGGCATGAATCCCATGATG
CCGGATGGGCAAGGCAACGGATGGGGGGCCACAAGGAATGCCCGCCAGGG
TATGCAGGGAATGCCGCAAGGA
FMO05941.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED15-RA | 2592 | CG4184-RA | 101..1021 | 9..922 | 4310 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 473223..473969 | 62..807 | 3575 | 99.5 | Plus |
| 2L | 23513712 | 2L | 473113..473165 | 9..61 | 265 | 100 | Plus |
| 2L | 23513712 | 2L | 474053..474149 | 829..922 | 250 | 88.7 | Plus |
Blast to na_te.dros performed 2014-11-28 21:26:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 674..777 | 459..359 | 125 | 61.9 | Minus |
FMO05941.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:54 Download gff for
FMO05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED15-RA | 101..1019 | 9..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:02 Download gff for
FMO05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED15-RA | 93..1011 | 9..921 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:58 Download gff for
FMO05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED15-RA | 101..1019 | 9..921 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:58 Download gff for
FMO05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 473113..473165 | 9..61 | 100 | -> | Plus |
| 2L | 473223..473994 | 62..829 | 99 | -> | Plus |
| 2L | 474054..474147 | 830..921 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:54 Download gff for
FMO05941.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 473113..473165 | 9..61 | 100 | -> | Plus |
| arm_2L | 473223..473994 | 62..829 | 99 | -> | Plus |
| arm_2L | 474054..474147 | 830..921 | 93 | | Plus |
