FMO05942.5prime Sequence
1111 bp (874 high quality bases) assembled on 2008-09-15
> FMO05942.5prime
CAGTCGACATGCACTCAAATCTTTGGATATTTATTTGGCGCCGGAAACTT
TCCTTCCTGCTCGTCGTGTCTGGCCTGGTGCTTCTCGGCCTCTGGACATG
GGCCATACTAATCGATACGACAGCCTCAGCACAGCCTCCTGCCGCCCCCA
TTTCCAATTCTGAGCGCCAGCAGCAGCAGCAGCAGTCCACGGGTTACCAG
CAGGTGCACATCATCCAGAAGCTTATCGAGCAGGCAAACCGGGTGCTGCG
TGCCGAGCGGCTCAAGGATAACGCTGTCGAGAAATCGCCATCGCCAGTCC
AGCGGCTGGGAAACGTGCGTTCCCTGCGACCCACACAGGCCAAGAAGGCG
CCGCTGCCCATGTCCGAAAGCTTCCTGTTCGAGCAGGAGCGCCTCAAGAT
TCTGGAGCAGCAGCAGCGCCAGAGAAACGCCGGTATGGAGGAACTGAACG
CCAATGCCGAGGACGAGCGAATGCTCAGTTCGGCGGAGCGACAGACTCAG
TACGAGCACGAGCTTCAGAGGATGGGCGTGCCGGTGGTGGCTGGCATCGG
GCCGGATGGTCCGAGAGCTCCCGCCGAGCGTCTCGTTCATCTGGACTTGA
AGGGTGCTCCGCCTAAGCTAAGCTTTCTCAAGCAACTGCTGCCCGTGCTG
CGGGCACTGGGGAGCCACTGGTCTGCTCATAGAGTACGAGGACATGTTTC
CCTACAGCGGAGTTCTTCAGCCGCTGGCCGCGCACAATGCCTACAAGGAG
GACGAACTGCGGGACTTCCTCGAGTGCGCTGCCCTCATGGACTGAGCGTA
ATGCCTCTCGTTCAACCTTTGGGGCACATGGAATACTCCTCAAACTCTCG
GGCTTCAAGCACTGTGTTGAGCTGGCTGAAATCCACAGTCGATTTGCCCC
ACCAGCCCAGAGCATGGCCCTGCTGACAAAGCTCACTCAAGTGATCGATT
TGCTTCGCGTGCTTGGGTAAGCAACGCCCGCCACCAACGTTCCGTGGCGC
GAATCAGTTCACCCATAATTTCAATCCGTTTGGGACAAGTTCAACGCCTG
GGCAAATTGCAACAACATGCCGCAGAAGCTACCCGTTGATCTCTCCCTCC
CGCAAGGTGTA
FMO05942.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7985-RB | 2593 | CG7985-RB | 121..1226 | 9..1104 | 4555 | 95.4 | Plus |
| CG7985-RA | 2609 | CG7985-RA | 137..1242 | 9..1104 | 4555 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18212409..18213162 | 9..763 | 3710 | 99.7 | Plus |
| 3R | 32079331 | 3R | 18213209..18213482 | 757..1017 | 490 | 88 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:49:09 has no hits.
FMO05942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:13 Download gff for
FMO05942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..1169 | 9..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:09 Download gff for
FMO05942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..1169 | 9..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:19 Download gff for
FMO05942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7985-RA | 137..1169 | 9..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:19 Download gff for
FMO05942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18212403..18213161 | 1..762 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:13 Download gff for
FMO05942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14038125..14038883 | 1..762 | 99 | -> | Plus |
