FMO05943.5prime Sequence
1177 bp (970 high quality bases) assembled on 2008-09-15
> FMO05943.5prime
CAGTCGACATGTGCGCCGCGCTGCGTCGTAATTTGTTGCTGAGGAGCCTC
TGGGTCGTCCTGGCCATTGGCACTGCTCAGGTTCAGGCCGCATCGCCGCG
ATGGGAGCCCCAGATTGCCGTTCTCTGTGAGGCCGGACAAATCTACCAGC
CGCAGTATCTTTCCGAGGAGGGACGCTGGGTGACGGACCTTAGCAAGAAG
ACAACCGGTCCCACATGTTTGCGTGATAAAATGGATTTGCTTGATTACTG
CAAGAAGGCCTATCCCAACCGAGACATAACCAACATTGTGGAGTCGTCCC
ACTACCAGAAGATCGGCGGCTGGTGTCGCCAGGGGGCATTGAATGCGGCT
AAGTGCAAGGGATCCCACCGATGGATCAAGCCATTCCGCTGTCTCGGACC
ATTCCAATCTGACGCCCTGCTAGTTCCCGAGGGCTGTCTGTTCGACCACA
TCCACAACGCCTCCCGATGCTGGCCATTTGTGAGGTGGAACCAAACCGGA
GCAGCCGCTTGCCAGGAGCGCGGAATGCAGATGCGCAGCTTCGCCATGCT
TCTGCCCTGCGGAATCTCGGTCTTCTCCGGAGTGGAGTTCGTCTGCTGTC
CCAAGCACTTCAAAACCGATGAAATTCATGTAAAGAAGACCGACTTGCCG
GTGATGCCGGCAGCTCAGATCAATAGCGCCAATGACGAGCTGGTGATGAA
TGACGAAGACGACAGCAACGACTCGAACTACTCGAAGGATGCCAATGAAG
ACGATCTGGACGATGAGGATGATTTTGATGGGTGATGATGAGGAGGACGA
TATGGTTGGCGGATGAGGCAGCTACCGCAGGCGGAAGCCCCAACACCGGT
TCCTCAAGTGACTCAAATAACGGATCTTTGGATGACATAAATGCGGAGTA
CGATAGCGGAGAGGAGGGTGACAACTACGAGGAGGACGTGCTGGTTCCGA
AAGCGAGGCTGAGGTTGAGGCCTCCTGGGATCGAAGCGGAGGGCGAAGGT
TGTGGTCCTAAAAGCGATTCCTCATCCCGGTCTAGCGCTCCGGTTGCCTC
CCGCCCCCGAAGAAGGCAACTGGTGAAGTCGGATTCGGGTAACGAGCCAC
TCCCTCAGCTGGCTTGCTCTTGGCGCGCTGTCTTTTGGTACCTGCCAAAT
TCTGGAACTCCGGGAACCCGGAACCCG
FMO05943.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Appl-RE | 6324 | CG7727-RE | 207..1355 | 9..1168 | 5130 | 97.1 | Plus |
| Appl-RB | 6331 | CG7727-RB | 193..1341 | 9..1168 | 5130 | 97.1 | Plus |
| Appl-RA | 5422 | CG7727-RA | 207..1355 | 9..1168 | 5130 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 571427..571871 | 616..1060 | 1835 | 97.1 | Plus |
| X | 23542271 | X | 571133..571352 | 396..615 | 1100 | 100 | Plus |
| X | 23542271 | X | 560601..560777 | 82..258 | 885 | 100 | Plus |
| X | 23542271 | X | 570860..571001 | 256..397 | 710 | 100 | Plus |
| X | 23542271 | X | 531799..531877 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:05 has no hits.
FMO05943.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:51 Download gff for
FMO05943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Appl-RA | 227..1293 | 1..1062 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:54 Download gff for
FMO05943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Appl-RA | 170..1236 | 1..1062 | 98 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:37 Download gff for
FMO05943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Appl-RA | 196..1262 | 1..1062 | 98 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:37 Download gff for
FMO05943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 531788..531876 | 1..86 | 95 | -> | Plus |
| X | 560606..560776 | 87..257 | 100 | -> | Plus |
| X | 570862..571000 | 258..396 | 100 | -> | Plus |
| X | 571134..571352 | 397..615 | 100 | -> | Plus |
| X | 571427..571875 | 616..1062 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:51 Download gff for
FMO05943.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 425821..425909 | 1..86 | 95 | -> | Plus |
| arm_X | 454639..454809 | 87..257 | 100 | -> | Plus |
| arm_X | 464895..465033 | 258..396 | 100 | -> | Plus |
| arm_X | 465167..465385 | 397..615 | 100 | -> | Plus |
| arm_X | 465460..465908 | 616..1062 | 96 | -> | Plus |
