FMO05944.5prime Sequence
766 bp (766 high quality bases) assembled on 2008-09-15
> FMO05944.5prime
CAGTCGACATGTCCGACGTTGAGCAGGCGATTAAGGCCAAGCAACCGCAG
CCGTCTCAGTTGGACTGCTCCATTGACGATGAGACGGATGCCACCGAATT
CGGAGGCCTGGGCGGAGTGGGTGGTGCGGGTTGTGGATCGGAGATGGGTG
CCAAGACCACCGCTTCGCTGACCGCCAAGCCGCGCAGCAGTCTCCGGCGC
TGCTGCGGTCACTTGCTCAAGCTGCTCTTCTCCACGCCCGGCCTGGTGCT
CCTGGTCATCGGCTACTCCGTGCTGGGCGGGCTCCTCTTCCCGCTGCTGG
AGGCGCCGCAGGACATCAGCAAGTCGGCTGCCATTGCCAAGAGCCGGGAG
GACTGCTTGCGCGAACTCTGGATCATTACAGAGAAACTCAACGTTCTGTA
CGAACGCAACTGGACGATGTTGGTCCACGAGCAGCTGCGTCGCTTCGAGG
GCTCCATTGTGGCGGCCACGCGCCAAGGATCTGCTGGCTCCTCCGGCGGA
GGAGGAGCAGGACTCTTCCACGAGGGCAGTGCGAGTGCCCTGGGCCACTT
TGGCTACGATGCCGGCGACTCGCAGAGCTGGTCATTCAGCGAAGCTCTGC
TCTACTCGGTCACTGTGATAACGACAATTGGTCACGGCAGCCTGACGCCG
CGCACCGCCGCCGGGAAGCTGGCGACCATCTTCTACGCCCTGGTGGGCGT
GCCCCTCATGCTGATGTGCCTGTCCAGCTTGGGAGCCCTGCTCGCCGATG
GCCTTGCAGTGCACCT
FMO05944.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1688-RA | 4116 | CG1688-RA | 1158..1915 | 8..766 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9779366..9779739 | 381..8 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 9776956..9777209 | 632..379 | 1270 | 100 | Minus |
| 2R | 25286936 | 2R | 9775876..9776011 | 766..630 | 635 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:26:59 has no hits.
FMO05944.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:02 Download gff for
FMO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1151..1915 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:07 Download gff for
FMO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1141..1905 | 1..766 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:06 Download gff for
FMO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1688-RA | 1151..1915 | 1..766 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:06 Download gff for
FMO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9775876..9776010 | 631..766 | 99 | <- | Minus |
| 2R | 9776958..9777206 | 382..630 | 100 | <- | Minus |
| 2R | 9779366..9779745 | 1..381 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:02 Download gff for
FMO05944.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5663381..5663515 | 631..766 | 99 | <- | Minus |
| arm_2R | 5664463..5664711 | 382..630 | 100 | <- | Minus |
| arm_2R | 5666871..5667250 | 1..381 | 99 | | Minus |
