FMO05945.5prime Sequence
800 bp (800 high quality bases) assembled on 2008-09-15
> FMO05945.5prime
CAGTCGACATGCGATTCGCTCTGGCCACCGTGGCCATCATCTGGGCTTTA
TTCGTCCTGGCCGACGGAGTGGACCCCGGGAACTTTAAGACCTGCGAGCA
GAGCAGTTTTTGTCGACGCTCCCGAAAGATTCAGGGATCGGGCAGCAAGT
ACGCCTTAATTCCCGGCACCTTGAACACCTATGCGGATTCGTTGACCGCT
GATCTCGTTAACAAGGAAAACCATCACCAGTTTGCCTTTAAGCTAGAGGC
TCTGGTGGGCAGTACCTTCCGCCTGCAGATCGATGAAAAGCAGCCACTTC
GGCCACGATATCGCGTCGAGCACGCTCTGAAGGGCCCAACCCAGGCCGGA
CGCATTCGTGTCCAGCGGGAAACAGATGGAGAGATCGTTATCACATCGGA
GAAGAACAAGGCTGTGATCCACGGAGACCCGTTCCGCATCGATTTCTTCG
AGAACGACGTGCTGGTGGTCTCGGTGAATGCCAAGAACTGGTTGTACTTT
GAGCATCTGCGGCAGAAGGCCCAGGAACCGACCTCCCACCCGGCGGAAAA
CGAGAATCAGCAGGAGGGGGGTGCCGCGGTCGAAACTCCTAAAGCAGCAG
ATACTATCGATGATCCTGGTGCATGGGAGGAGAACTTCAATCACACCACG
ACTCTAAGCCCTACGGTCCGGAAGCTGTGGCTCTGGACTTTTCGTTCCCC
GCAGCCAAAGTTCTATTCGGTATTCCAGAGCACGCCGACAGCTTCATACT
AAAGTCCACCTCGGGTACTGATCCTTACCGCCTGTACACCTGGATGTGTT
FMO05945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14476-RC | 3252 | CG14476-RC | 136..930 | 8..800 | 3850 | 99.1 | Plus |
| CG14476-RE | 3264 | CG14476-RE | 246..1040 | 8..800 | 3850 | 99.1 | Plus |
| CG14476-RD | 3129 | CG14476-RD | 111..905 | 8..800 | 3850 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21603044..21603731 | 800..115 | 3265 | 99 | Minus |
| X | 23542271 | X | 21604463..21604570 | 115..8 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:21 has no hits.
FMO05945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:23 Download gff for
FMO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 112..914 | 1..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:08 Download gff for
FMO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 112..914 | 1..800 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:27 Download gff for
FMO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14476-RD | 103..905 | 1..800 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:27 Download gff for
FMO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21603044..21603730 | 116..800 | 98 | <- | Minus |
| X | 21604463..21604576 | 1..115 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:23 Download gff for
FMO05945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21474071..21474757 | 116..800 | 98 | <- | Minus |
| arm_X | 21475490..21475603 | 1..115 | 97 | | Minus |
