FMO05946.5prime Sequence
1156 bp (977 high quality bases) assembled on 2008-09-15
> FMO05946.5prime
CAGTCGACATGTGCAGCCTGACGCCAAACCACATGGTAAACGTAACGCAG
CAGCACCTACACGATCTATTGGAAACTTTCGAAAAAAAGTCCTTCGAGGC
GGCGGCCTTTGAGGAAGGGACGGCGGAGTACGACATCTCCAAAAAATGCG
AATACCTGTTTAAGCTCGACTACAGCCTAATTGAGCTGGATAATACGAAC
GGATTGCTCAGTCCGCGATATCCTGGCCGAATACTCATCCCGGAATATGA
GCACGGGCACATGGCCAAGACGCTGGTACCGGGAAATGGACTCTTCGGGC
AAGTTGGTGGGGGAGTGGGAGGTGGAGGCTCCTCGGGAACAACCGCCACT
GCCACGCCTCTGAACAGCAGTGCAGGAAGCACCGGAAGTGAGGGTGTGGG
CATCCAAGCCTTTGTGACCTTTGCCAATCCCCTGCAGACGCAACAACAGC
ATCCGCTCCAGCAACAATATCCCTCGCAGCAGATGCATCCCCTCCACGCG
CAATATCCCTCCCAGCAGCCACATCCACTCCAGCAGCAGCAGCAGCAGCC
ATCGCAACAGCAACCACAAAATACGATATACGAGGATCAGTATGATATCC
AGCGAATGCGGGAATTGGTAACGATGGCCAAATATGCGAGATGCCGTCAA
AGATTCGCCGTGCCTGTGATTATGTATCGCGGAAAGTACATATGCCGCTC
TGCCACGCTATCCGTCATGCCAGAAACCTACGGCCGAAAAGTGGTGGACT
ATGCCTACGACTGCCTGAGTGGCGGCAATTACACCGCGCCAAACGGAGAA
GAGAACGATGCTGACTCCACGGACGAGTCGCTGATCACCCACATGCACGA
CCAGGCGCAGTCGCAGTTCAGCTTACGACGAAGTCATCAAGAGTGACATC
CAGCTGCTGCATACGCTCATTGTCTCAACCATTGTGTGGACCTCATGGTC
GAACAACGGCAAATCAAATACTTTCATGTCGGTCTCCTCGTCAGAGAAGC
GGATCCCACAAGCACTTATAGAGCTTTAACTTTCTATCCTGTGCCGTATT
CGGGGCTGGGGGTTCTTCAAAAAGTTCCGGGGAACAATATTTACTGGGCT
CGCAACTGTGCACTACAAACGTGGTAAGCAACGGTCAACGGAAGTGGCGA
TATATC
FMO05946.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EDTP-RC | 3151 | CG6542-RC | 487..1589 | 9..1118 | 5005 | 97.4 | Plus |
| EDTP-RA | 3130 | CG6542-RA | 487..1589 | 9..1118 | 5005 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17434131..17434976 | 973..125 | 4055 | 99.1 | Minus |
| 2R | 25286936 | 2R | 17444335..17444452 | 126..9 | 590 | 100 | Minus |
| 2R | 25286936 | 2R | 17433935..17434054 | 1106..985 | 190 | 86.3 | Minus |
Blast to na_te.dros performed 2014-11-28 20:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6903 | 435..616 | 225 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2299..2449 | 421..571 | 224 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2543 | 435..581 | 206 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6921 | 432..571 | 205 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6865 | 458..602 | 203 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2477 | 435..572 | 191 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6882 | 432..568 | 189 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6832..6946 | 434..551 | 186 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2395 | 481..571 | 165 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6777 | 510..568 | 160 | 74.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6676..6798 | 455..568 | 151 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1585 | 433..502 | 143 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2962 | 435..568 | 138 | 57.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1163 | 418..534 | 136 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6693..6756 | 506..568 | 128 | 68.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6059..6114 | 431..486 | 127 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2347 | 531..571 | 115 | 75.6 | Plus |
FMO05946.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:30 Download gff for
FMO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1578 | 9..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:10 Download gff for
FMO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1578 | 9..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:17 Download gff for
FMO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EDTP-RA | 487..1578 | 9..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:17 Download gff for
FMO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17444336..17444452 | 9..125 | 100 | | Minus |
| 2R | 17434125..17434975 | 126..980 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:30 Download gff for
FMO05946.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13321630..13322480 | 126..980 | 98 | <- | Minus |
| arm_2R | 13331841..13331957 | 9..125 | 100 | | Minus |
