FMO05947.5prime Sequence
1174 bp (1061 high quality bases) assembled on 2008-09-15
> FMO05947.5prime
CAGTCGACATGTATCCCTCACCGGTGCGCCACCCCGCCGCCGGGGGACCA
CCACCTCAGGGTCCAATCAAGTTCACCATCGCCGATACACTGGAACGCAT
CAAGGAGGAGTTCAACTTCCTGCAGGCGCAGTACCACAGCATTAAATTGG
AGTGCGAGAAGCTGTCGAACGAGAAGACGGAGATGCAGCGCCATTATGTT
ATGTACTACGAGATGTCCTATGGCCTTAACGTGGAGATGCACAAGCAGAC
CGAGATCGCCAAGCGGCTGAACACACTGATCAACCAGCTACTTCCATTCC
TTCAGGCCGACCACCAGCAGCAAGTGCTGCAGGCGGTGGAGCGGGCGAAG
CAGGTGACCATGCAGGAGCTCAACCTGATCATTGGGCAACAGATCCACGC
CCAGCAGGTGCCAGGTGGACCACCTCAGCCGATGGGCGCACTGAATCCGT
TTGGCGCCCTGGGCGCCACCATGGGCCTGCCACACGGACCGCAAGGTCTG
CTGAACAAACCGCCCGAACACCACAGGCCGGACATCAAGCCGACGGGTCT
AGAGGGGCCAGCAGCCGCCGAGGAGCGATTGCGCAATTCGGTTTCGCCGG
CCGATCGTGAGAAGTATCGCACACGCTCGCCGCTGGACATCGAGAACGAC
TCGAAGCGTCGAAAAGATGAGAAACTGCAAGAGGATGAAGGCGAGAAAAG
CGATCAAGATTTAGTCGTAGATGTTGCAAATGAAATGGAATCCCACTCAC
CGCGTCCCAACGGCGAGCACGTGTCTATGGAGGTGCGCGATCGGGAAAGC
TTGAATGGCGAGCGCCTGGAGAAGCCAAGCAGTAGTGGCATCAAGCAGGA
ACGGCCGCCCTCACGCTCCGGCTCCAGTTCGTCACGTTCCACACCCAGCC
TCAAGACAAAGATATGGAAAAGCCGGGTACACCGGGCGCCAGGCACGCAC
ACGACCACGAACGCCGCTGCTCTGCGCCAGGCGTTAATCCTAAACAAATG
ATGCCGCAGGACCACCGCCAGCCGATATCCGGTGCACCGTATCAAAGCCG
GCCGATCCCTACACGTCCACGGTCGATCAGCTATGGACGACCCCCACAAT
GGCGTACGATCCGCACGCCCAGTGGCGACCCATGGCATCCATCCTCGGCC
TTACGGTGGAAGCTGCCATCTCTT
FMO05947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gro-RF | 2975 | CG8384-RF | 520..1666 | 7..1138 | 5210 | 97.9 | Plus |
gro-RC | 2887 | CG8384-RC | 432..1578 | 7..1138 | 5210 | 97.9 | Plus |
gro-RD | 2908 | CG8384-RD | 453..1599 | 7..1138 | 5210 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26045468..26045663 | 386..581 | 980 | 100 | Plus |
3R | 32079331 | 3R | 26044443..26044626 | 203..386 | 920 | 100 | Plus |
3R | 32079331 | 3R | 26046732..26046905 | 737..910 | 870 | 100 | Plus |
3R | 32079331 | 3R | 26045728..26045828 | 581..681 | 505 | 100 | Plus |
3R | 32079331 | 3R | 26043514..26043609 | 44..139 | 480 | 100 | Plus |
3R | 32079331 | 3R | 26046974..26047194 | 914..1121 | 390 | 90 | Plus |
3R | 32079331 | 3R | 26044307..26044373 | 137..203 | 335 | 100 | Plus |
3R | 32079331 | 3R | 26046536..26046593 | 681..738 | 290 | 100 | Plus |
3R | 32079331 | 3R | 26043342..26043380 | 7..45 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:06:11 has no hits.
FMO05947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:33 Download gff for
FMO05947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gro-RD | 447..1603 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:58:55 Download gff for
FMO05947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gro-RA | 477..1633 | 1..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:36 Download gff for
FMO05947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gro-RD | 447..1603 | 1..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:36 Download gff for
FMO05947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26043336..26043379 | 1..44 | 91 | -> | Plus |
3R | 26043515..26043609 | 45..139 | 100 | -> | Plus |
3R | 26044310..26044373 | 140..203 | 100 | -> | Plus |
3R | 26044444..26044626 | 204..386 | 100 | -> | Plus |
3R | 26045469..26045663 | 387..581 | 100 | -> | Plus |
3R | 26045729..26045827 | 582..680 | 100 | -> | Plus |
3R | 26046536..26046592 | 681..737 | 100 | -> | Plus |
3R | 26046733..26046909 | 738..913 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:33 Download gff for
FMO05947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21869058..21869101 | 1..44 | 91 | -> | Plus |
arm_3R | 21869237..21869331 | 45..139 | 100 | -> | Plus |
arm_3R | 21870032..21870095 | 140..203 | 100 | -> | Plus |
arm_3R | 21870166..21870348 | 204..386 | 100 | -> | Plus |
arm_3R | 21871191..21871385 | 387..581 | 100 | -> | Plus |
arm_3R | 21871451..21871549 | 582..680 | 100 | -> | Plus |
arm_3R | 21872258..21872314 | 681..737 | 100 | -> | Plus |
arm_3R | 21872455..21872631 | 738..913 | 99 | -> | Plus |