Clone FMO05948 Report

Search the DGRC for FMO05948

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:59
Well:48
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11070-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05948.5prime Sequence

601 bp (601 high quality bases) assembled on 2008-09-09

> FMO05948.5prime
CAGTCGACATGACAAGCATCGAGGAGAATCCGTTCGCGGCTCTGCTGCAG
GAGGGCGCCAACTCCGATGGCGTGCCGCACAAACTGGTCGAGGAGGTGCT
CCTCTTCACGCTGAACAAGGCGTCCTCTTCCGCGGTCCTGTGCCTGGCCG
ACGTGGTGGTGGAGACCAGCGAGGAGATGCTAAGTGAGGACCTGGTGGCC
CACGCCCTCTTTGAGCGCCTGATGCTGGCCGAGACCAGCCAGTATGCAGC
GGGCAATGCCAGTGAAATGGCCATGGAGCGGCGAGCTATGCGTTACCTTA
AAGGTGCCTTCACGCGATGCGGACTCATTCAGGCGGAGAGGAAAATCGAT
TGCTCCAAGATACTAGCGCTTATCCTAAACAATGCCAGCACCTGCATGCG
CCAGCCGGACCTCTTTGCACCGCAATCCTTCGGTGCCCAGTGGATGGAGA
TGTTCGAGCAGGATGAGGATGAGCACGATACCAGCACGCAGGAGTTTTTG
ATACGCGTCACCTGCAAGGTGATGGAGGAGGTGGAGCCGATTGAGGCCCC
TGGGCGCCCTAAAGGCCATCTTCTACCCTGTGCTCACCGAGCTGCAAAAA
A

FMO05948.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11070-RA 3391 CG11070-RA 76..662 9..596 2915 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6658592..6659178 9..596 2890 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 20:16:58 has no hits.

FMO05948.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:26 Download gff for FMO05948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11070-RA 74..661 5..595 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-09 11:01:17 Download gff for FMO05948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11070-RA 47..634 5..595 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:34 Download gff for FMO05948.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11070-RA 74..661 5..595 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:34 Download gff for FMO05948.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6658590..6659177 5..595 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:26 Download gff for FMO05948.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6658590..6659177 5..595 99   Plus