FMO05949.5prime Sequence
1120 bp (960 high quality bases) assembled on 2008-09-15
> FMO05949.5prime
CAGTCGACATGGATCTGATGGAACTGCTGAAGCAGGCCCAGCGCCTGACG
AACGAGACCAATACGGACACGGAGGTGCCGGGCGTGGAACGGACCATGTC
CCAGGTTCTGCAGGCAACCAAGGAGTTTCACTCGCGTGTCACCCAAATGG
GCACCAATGATCTGCAGGCCCACATACTGCTCGGCTCTAAGGGCGTGGAC
CTGCCCAAGCTTACACAGAAGCTGGAGTCGCTCAGCGCCCGCCAAACCTT
CGAGCCGATTGATCCGGTGACGGAGACCAATGTGCAGGCCTATCTGAAGA
ACGAGCGGGAGAACGCCATACTCTCAGTTATCGATGAGACGAATCGCAGT
ATATTTAAATCTGTGGAGCGACAGAAGTGGCGTTGCATCTACTCGGAGTG
GGGCGAGGAGAAGGAAGCGCTGCTAAACGCTCTGGTCGGACCAAACCAAC
AGGACTTCCCCGACGTCCAGTTTCAGATAGTGCCCACGGCCATGGCTGAT
GAGCCCACTCCGTACTCCCAACTGAATGGCCATGAGCAGATGTACGCTGA
ACAGATCGCCATCCACAACCAGTCGATCATCCTGGGCAGACGCCCTAACT
TGCTGTCGACCCTTGCCCACGTGGTCCAAGACTCCTTCAACGATGAGTCC
GTAGCCGAGATGTGGAATGTATTGCAGTTTATGACCGCGTTGCCGCCAGT
CTCGAGCACCATCGATCCCAATCAAGAATCGTCAGACATCACCGCAATTC
GTTTGAGCAAGCCCGCACGTACTTGGAGCGCAGATATAGGACGTATATGA
GAAAGTTTATCGTCGCGAATTTGGCCAAAGCGCGGCGGGGAGGATCCCCA
GCGTGTACCATATGGTCCGCTCCTATGTGGGCGTTACTCTCCAGGGCAGC
GAGCCCTCTACGGGCTGCATGACGTGAACATTGGCAAGCCATTTGGCACC
TGTTTACTATAGCTTGGGGAGTGCGATTGGACGCGGCTGCATTGTATCTC
AAGGATTCCGGGAACCTGCCGGACCTGCTTACCTTATTTGACGTGCGAAG
AACGGATAGGACACCTTGATGTAAAGCCTGAAGGGTCTACTAAGTTGGAA
TCCACAGTTAACCTGCCGCC
FMO05949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nup93-1-RA | 2786 | CG11092-RA | 98..1201 | 5..1099 | 4870 | 97 | Plus |
| Nup93-2-RA | 2497 | CG7262-RA | 179..420 | 102..343 | 400 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13823411..13824096 | 351..1032 | 2835 | 96.5 | Plus |
| X | 23542271 | X | 13823151..13823331 | 170..350 | 905 | 100 | Plus |
| X | 23542271 | X | 13822923..13823087 | 5..169 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 14897895..14898067 | 343..171 | 310 | 78.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:06:22 has no hits.
FMO05949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:42 Download gff for
FMO05949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 119..1163 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:12 Download gff for
FMO05949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11092-RA | 119..1163 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:41 Download gff for
FMO05949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nup93-1-RA | 96..1140 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:41 Download gff for
FMO05949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13822921..13823087 | 1..169 | 98 | -> | Plus |
| X | 13823151..13823331 | 170..350 | 100 | -> | Plus |
| X | 13823411..13824107 | 351..1044 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:42 Download gff for
FMO05949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13716954..13717120 | 1..169 | 98 | -> | Plus |
| arm_X | 13717184..13717364 | 170..350 | 100 | -> | Plus |
| arm_X | 13717444..13718140 | 351..1044 | 97 | | Plus |
