FMO05950.5prime Sequence
1168 bp (958 high quality bases) assembled on 2008-09-15
> FMO05950.5prime
CAGTCGACATGTCGAAACGTGGGCAACCGGCGTGGCAAGCTCCCGAGGCG
GTGGATCGGCCGAAACTGAAGCTGTTCAACAGCCTGACGCGACAGAAGGA
GGACTTCGTGCCGCTGGACGGCAATAATGTAACGTGGTATAGCTGCGGAC
CCACCGTCTACGATGCCTCACACATGGGGCATGCTAGATCTTACATTTCC
TTCGACATTCTGCGGCGCATTCTGTCCGACTACTTTGGCTACAACATTCA
CTATGTGATGAACATTACGGACATCGACGACAAGATCATAAGGCGTGCGC
GGCAGAATCATCTCTTCGACGAGTACGCTGCTGAGGCGCAAAAGCTGCCA
CTGGATGAGCTGCTGGGTCAGCAAAAGGAGGTACTGCAGCGGTTTCAGGA
TACATGCGCCAAGAATACAGATCCCGACAAGAAGATTATGCTCGACAAGA
CACTGCAGCGGATGAACGATGCTGTGGAGGCGCTGACCAAGGCCGTTGGC
AAGGGTGATGAGCGGGAGATATCCGAGAAGCGGCTGCTTTACCTAAACGA
AGCCAAGGATCCAATTTCCGACTGGTTGGACTCGCTAAAGGGTGCTCAGA
TCAATGATAATGCAGTATTTGAGGCACTGCCGCGGTACTGGGAAAGACCA
GTTCCACAACGACATGAAATCGCTAAAATATTCTCCCGCCAGATGTTTTA
ACTCGCGTTTCGGGAGTACGTGCCACAAATCGTCACCTTTATTCAAAAGA
TTATCGACAATGGCTTGCCTATGCAGCCAACAACTCCGTTTATTTCGATG
TAAATGGCTTCGACAAGAGGGAAAAGCATCATTATGCTAAGCTGGTGCCA
GAGCATATGGCGACACCAAGTCCCCTGCAAGAAGGTGAAGGCGATCTGTC
CATCGCAGAGGATTCGTCTCTCCGAGAAGCGTTCTGCCCATGACTTTGCC
TTGTGGAAGCGAGCAAGCCGGCGACCCTGTGGGAATAGCCCTTGGGGCAA
GGCCGTCAGCTGGCACATTGAATGCTCGGCCATGCCTCGGATATCTTGGG
CCACGTTTGATATACACACTGGCGGTGTGGACTTTAGTTCCCTTCTCACG
ACAACAGCTTGCCATCGAGGCGCTTTTTAATGGATCGATGGTTAGTACTT
CCTGGCACGGTACCTCAC
FMO05950.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aats-cys-RA | 2453 | CG8431-RA | 90..1202 | 9..1113 | 5035 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16143480..16143970 | 186..677 | 2410 | 99.8 | Plus |
| 2R | 25286936 | 2R | 16144027..16144461 | 680..1105 | 1375 | 94.5 | Plus |
| 2R | 25286936 | 2R | 16143236..16143414 | 9..187 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:12 has no hits.
FMO05950.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:52 Download gff for
FMO05950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..1208 | 9..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:08 Download gff for
FMO05950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 87..1205 | 9..1117 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:51 Download gff for
FMO05950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aats-cys-RA | 90..1208 | 9..1117 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:51 Download gff for
FMO05950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16144027..16144464 | 680..1107 | 95 | -> | Plus |
| 2R | 16143236..16143414 | 9..187 | 100 | -> | Plus |
| 2R | 16143482..16143971 | 188..679 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:52 Download gff for
FMO05950.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12030741..12030919 | 9..187 | 100 | -> | Plus |
| arm_2R | 12030987..12031476 | 188..679 | 99 | -> | Plus |
| arm_2R | 12031532..12031969 | 680..1107 | 95 | -> | Plus |
