FMO05951.5prime Sequence
1165 bp (952 high quality bases) assembled on 2008-09-15
> FMO05951.5prime
CAGTCGACATGCCACCGGCGTACGACCTTGGCCATTCCGGAGAGGCGTAC
CAACCCCTGGACACTGGCAGCGGCGGCGGAAACGAAGCCTGTGCCCCGAA
CTCATCCTCCGCGCAAATCCGCCATTCGATGGGATTCCGGACATCCTGGA
TGCGGCAGTTCCGCCGCTACAAACTGCCCATGGTGCTGCTGATGCTGCTG
TTTCTCGTTTCCTGCCTAGCATACCGCATCCTAAGCGTGGAGCAAGATGC
CCCGCCACTGGATCTGCATCGTAGTTCACCGCTGCTAGATGCCTACGAAG
ATTTCAGCGCCATGAGAGCAGGAGATCTGAAAATGCGCATCGAGGAGATG
GTTAGAATCAAGAGCACCGTGTCCGTGGAGTTGCGCGAATTGGAGTCCCG
TCGCCAGAAGCTGCAATCGGACATTAGCCAGTACAACCAGAAGATCGAGG
AGCTCAAACAGGAACTGCTTAGGGAGCAAACAGAACTGGAGCGCCTCAAG
ATCTCCGTGGAGCAGGCTCAGGTGGCCCAGCGGGAGGCTGTTCAGCGGAA
TACACCGGACTTGGCCTTGCCCCGCTCTCTTTTACCCAACACACTGCCAA
GAAAGAGTAATCCCATCACCGGAGGGATGGCGGCCAGCTGCGAAATGCAC
AACTGCTTCAATCACTCACGCTGCAGTCTAACCTCCGGATTTCCTGTTTA
TCTATACGATCCGGATGAGCATAGCGTTCAGCGAAAGGGTTACGATATCG
ATGGTTTCCTAAAGACGACTCTAAAGCAGACTTTAAGATACAATGCTCAT
AATAGTTAAGGATCCCAAGCATGCCTGCATTTATCTAGTTCTGGTGGGAG
AGGCTCTGCTTGAGCAGGATCTATTGCGAATAATCGCTATGCGGCTCAGA
GCGAGCATCAGCAGCCCTCGACGCCACACTCTAGAAAATGACTGCCCGTG
GACAGGAAAGCTTTACAGTCTGCAATATGGGGCGGCGATGGTCGCAATCA
TGTGCTGCTCAACTGGCGAGAAGAGATCTCACATCACATCGTACGAATCC
TTCCTACAGCAGACACTATGCAGCATGGGGGTGCAAGTGCCTTGAAAAGA
AACGTCCGTCAGGTTATGACCTAATTGGTGCCTCTAATTCGGGTCCTCTG
GAGGAGATGTTGTTG
FMO05951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| botv-RA | 3608 | CG15110-RA | 101..1270 | 8..1160 | 5110 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19130548..19131257 | 357..1059 | 2950 | 96.9 | Plus |
| 2R | 25286936 | 2R | 19129689..19129919 | 8..238 | 1155 | 100 | Plus |
| 2R | 25286936 | 2R | 19130368..19130493 | 237..362 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:50 has no hits.
FMO05951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:02 Download gff for
FMO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 94..1151 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:15 Download gff for
FMO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 89..1146 | 1..1051 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:19 Download gff for
FMO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| botv-RA | 94..1151 | 1..1051 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:19 Download gff for
FMO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19129682..19129917 | 1..236 | 98 | -> | Plus |
| 2R | 19130368..19130493 | 237..362 | 100 | -> | Plus |
| 2R | 19130554..19131249 | 363..1051 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:02 Download gff for
FMO05951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15017187..15017422 | 1..236 | 98 | -> | Plus |
| arm_2R | 15017873..15017998 | 237..362 | 100 | -> | Plus |
| arm_2R | 15018059..15018754 | 363..1051 | 97 | == | Plus |
