FMO05952.5prime Sequence
1158 bp (1014 high quality bases) assembled on 2008-09-15
> FMO05952.5prime
CAGTCGACATGAGTGCGCCTAGTGAGGGTGGCGCGGGAGGAGGGCCGGTG
GGCGGTGGAAGTACAGCTACAGCGCCATCAGCGCACCCGGCGGTGGCCGC
CAAGATCACCCACGTGAAATCCGACGGCGGCGGTGGGATATCCATTGCGG
GCACACCGATCCTCAGCGGAGGCACAATTAAGGTGGCGTCAGCCAATCAA
GTTCAACAAACTTCCCTAGGTGGCACTCCAATTGCTCTGAATGCAGGACA
AGCGACTACGGCAGCTTCGATCCGTGCTATTGGCGCTGGTGGTCAGTCCA
CACAGGTGCGGGTGGTGATGCCAATGATCAAGCAGCTAGAGAATGTTACG
GCCACCGGAAGGACTCAGATAACAGCCATACCAGCTGCACCGGCGAGGAG
TGGGGCGAATGCATCGATCACGGTTACCAGGCCCGTAACCCAGGCCACAT
ACTTGCCGCGAGCCAGTGTGACGGCCACCCAAATGGGAGGCGTTGGCGTT
GGAGTTGGCCAGCGGCTCGTCACGCCATTGAGAGCCACATCATCGGCCAC
GGTTACGCCCACAGCGCCAACAGTGCTGAGCTCAACCGGAGGATTCGTAC
GCGGAGCAACAGCATCGGTGAGCAGAAGTGGAGTGGCGCTCACATCGCAA
CCATCGTCGGCTGTCATCTCGTCCAGCAACAGTGGTGCTTGGATGCAGAG
TCAGGGACAGGTGCAACTGATCCGAACCATTCATCAGCCGCGCCAGCGAA
TTATAACGACATCCGCGGGGGTTTCGAATGCCAGTGTAGTGACCACTACT
CCAGTGCAGGCGCCAACAGCTCTTTCCGTTTCCGCTGGCCAGCCCTTGGC
GACACAACAGGCGACGGGACCGGGAGGAGGTCCTCAGCCTATGTGGCTAC
TGTATTGCCCAGAGGCAGCATCAGGCTACACTAGTTTACTCCTCAATGTG
GTCTGCACCGGAATGCAGGTCAGATCCGGGTCAGCATTTAATCACGCTTT
GCTGGTGCCACGCCCACAGCGAGTACAACACGACGGCCGGTGTGAACGAA
CAGTAACACCTCGACGGGTGCGGACATCCGGCTGGCAGAGTTTCAACGCT
AAGCTGACCACACCAGCAAATATACAGCCCAGCCATACGCACCTGAATTC
ACCGCTTA
FMO05952.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap130-RA | 4045 | CG11006-RA | 179..1301 | 9..1118 | 4970 | 97.2 | Plus |
| Sap130-RG | 4018 | CG11006-RG | 179..1301 | 9..1118 | 4970 | 97.2 | Plus |
| Sap130-RF | 4015 | CG11006-RF | 179..1301 | 9..1118 | 4970 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12807090..12807830 | 79..819 | 3705 | 100 | Plus |
| 3L | 28110227 | 3L | 12807884..12808089 | 818..1019 | 615 | 93.2 | Plus |
| 3L | 28110227 | 3L | 12806265..12806337 | 9..81 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:27:10 has no hits.
FMO05952.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:10 Download gff for
FMO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap130-RF | 179..1250 | 9..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:17 Download gff for
FMO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11006-RC | 192..269 | 9..86 | 97 | <- | Plus |
| CG11006-RC | 495..1488 | 87..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:14 Download gff for
FMO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap130-RF | 179..1250 | 9..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:14 Download gff for
FMO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12806265..12806337 | 9..81 | 100 | -> | Plus |
| 3L | 12807093..12807830 | 82..819 | 100 | -> | Plus |
| 3L | 12807886..12808146 | 820..1075 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:10 Download gff for
FMO05952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12799365..12799437 | 9..81 | 100 | -> | Plus |
| arm_3L | 12800193..12800930 | 82..819 | 100 | -> | Plus |
| arm_3L | 12800986..12801246 | 820..1075 | 92 | | Plus |
