FMO05953.5prime Sequence
1106 bp (929 high quality bases) assembled on 2008-09-15
> FMO05953.5prime
CAGTCGACATGGGTTCCCTATTCCGCAGCGAGGAAATGGCGCTGTGCCAG
CTGTTCCTGCAGAGCGAGGCGGCCTACGCCTGCGTCTCCGAGTTGGGAGA
ACTGGGATTGGTCCAGTTCCGAGATCTCAATCCCGATGTCAACGCTTTCC
AGAGGAAGTTCGTCAACGAGGTGCGCCGCTGCGATGAGATGGAGCGCAAG
CTGCGTTACCTGGAGAAGGAGATCAAGAAGGACGGCATCCCCATGTTGGA
CACCGGGGAGAGTCCCGAGGCCCCGCAGCCCCGCGAGATGATCGACCTGG
AGGCCACCTTTGAGAAGCTGGAGAACGAGCTGAGGGAGGTGAATCAGAAC
GCCGAGGCCCTGAAGCGCAACTTTCTGGAGCTGACCGAGCTGAAGCATAT
TTTGCGCAAAACCCAAGTGTTCTTCGATGAGTCGGTGCCCACGGTGTACA
AGTCGAGTGGCGCATACTCATCCAGCAAATATCGGCGCTATCCGCAGATG
GCCGACAACCAAAACGAGGACAAGCAGGCGCAGCTGCTGGGCGAGGAGGG
TGTCCGGGCCAGCCAACCGGGCCAGAATTTGAAGCTTGGCTTCGTGGCTG
GCGTCATCCTGAGGGAGCGACTGCCGGCCTTCGAGCGGATGTTGTGGCGC
GCCTGCAGGGGTAACGTCTTCCTGCGACAGGCGATGATTGAGACGCCGCT
GGAGGATCCCACCAATGGCGACCAGGTGCACAAGTCCGTGTTTATAATCT
TCTTCCAGGGTGACCAGCTGAAGACGCGCGTCAAGAGATCTGCGAGGGCT
TCCGGGCCACGCTCTATCCTTGCCCTGAAGCTCCAGCCGATCGGCGAGAG
ATGGCCATGGGTGTGATGACTCGCATCGAGATCTGAACACCGTGCTCGGC
CAGACGCAGACCATCGCCATCGTGTGCTGGTCGCTGCGGCCAGATCTTAG
AACTGGTTCGTCAGTGCGCAGATAAGGCATCTACGATCGCTGATTTCTTC
ATCTGGACGTGACTGAATGCTTGATCGGCGATGCTGGTACGCTGCTGGAC
TGACAATCGAGCTGGCTGGCGCCCGACTAGATCGGATCGCTGTGCCGCAA
TTTCAC
FMO05953.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-1-RE | 3066 | CG1709-RE | 205..1266 | 9..1050 | 4725 | 97.5 | Plus |
| Vha100-1-RC | 2959 | CG1709-RC | 103..1164 | 9..1050 | 4725 | 97.5 | Plus |
| Vha100-1-RA | 3000 | CG1709-RA | 626..1200 | 496..1050 | 2290 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29135262..29135490 | 717..942 | 995 | 98.7 | Plus |
| 3R | 32079331 | 3R | 29132126..29132303 | 126..303 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 29133270..29133429 | 430..589 | 785 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29132374..29132504 | 301..431 | 655 | 100 | Plus |
| 3R | 32079331 | 3R | 29135048..29135176 | 589..717 | 645 | 100 | Plus |
| 3R | 32079331 | 3R | 29131709..29131825 | 9..125 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 11741549..11741776 | 7..234 | 330 | 76.3 | Plus |
| 3R | 32079331 | 3R | 18393092..18393190 | 239..141 | 315 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:18 has no hits.
FMO05953.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:28 Download gff for
FMO05953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 95..1121 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:18 Download gff for
FMO05953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RE | 197..1223 | 1..1013 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:45 Download gff for
FMO05953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-1-RC | 95..1121 | 1..1013 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:45 Download gff for
FMO05953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29131701..29131825 | 1..125 | 96 | -> | Plus |
| 3R | 29132126..29132302 | 126..302 | 100 | -> | Plus |
| 3R | 29132376..29132504 | 303..431 | 100 | -> | Plus |
| 3R | 29133272..29133429 | 432..589 | 99 | -> | Plus |
| 3R | 29135049..29135175 | 590..716 | 100 | -> | Plus |
| 3R | 29135262..29135572 | 717..1013 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:28 Download gff for
FMO05953.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24957423..24957547 | 1..125 | 96 | -> | Plus |
| arm_3R | 24957848..24958024 | 126..302 | 100 | -> | Plus |
| arm_3R | 24958098..24958226 | 303..431 | 100 | -> | Plus |
| arm_3R | 24958994..24959151 | 432..589 | 99 | -> | Plus |
| arm_3R | 24960771..24960897 | 590..716 | 100 | -> | Plus |
| arm_3R | 24960984..24961294 | 717..1013 | 94 | | Plus |
