FMO05954.5prime Sequence
1160 bp (1020 high quality bases) assembled on 2008-09-15
> FMO05954.5prime
CAGTCGACATGGCCATCAATCAGGGCAAGTACAAACCGTCAATCTGCGCC
ATCGACGAGGTGGATGACCGCAGTTTCAAGCTGCACAACAGCCAGGACGA
GATCGGTGGCAAGCAGCAGCTGCAGCAGATCGAGGGCAGCGAAACGGCTC
CACTGACCACCAATCAGCAGAAGTTGCACATGGACGACGGTTCACATCTG
ACGCCCAAGGATCTGGAGGCGGCGCGCCAGGATGCCCTCAACGAGGTCGC
TGCCGGAGGAGCAGGTGGCAGGACACCAGCGGCAATCACACCCAACTCCA
CGCATCCATCGGCCAATGGACTGAGAGCCTTGTTGCTTCCAGGCCGACGA
TCCTTCGACGCGCTGATGAGCCTGTCGCGCAAGCGACGCATCCTGTACGT
AACCACCGCCTGCCTGTGCGCCCTGCTCCTGCTGATCATCATCCTGCTGC
TGGCCTTTTGGCCGGAGGTGCCCTTCTACCTGCGGGCGCCGCTCTGCCTG
GATAAGGAGTGCGTGGAGAGCAGCCGGCAGCTGCTCCTGTGGGCCAACAC
CTCGAAGAGTCCTTGCCACGAGACATACGAGTGGGCATGCGGCAATTTTG
CCAGCGATTATGCCAATCATGAGTACTTTGTGATCAAACGCGGCGAGTGG
AACTACGAGACCTACAATGAGTATCAGGAACTCAATGAACTGAATCGATT
TATTGCAATGCTGCCCAAATTCGCAAGAGGGTTCCGTGGAGTCCACGGTG
AGCAGTCTATATCGCAGTTGCCGCGAGACCGATGTCCTCGACAAGAGCCA
GTCGGATCTGCTCCTGAAACGGGCCATTATGCAGTGTATGGCTGGCAGGC
ATTCCGCGACTCCAATCGACTGCATCCTGGGAATACAAGCGGGTTCTGGT
CGTCCTACAAGCCAACATGGCATATTTCCTTACTACCGCGTCACCGTGGA
GAACGGCTTTAGTAACCCCACGACTATGTGATCAACCTGAACGAGGCGAC
TTGGTCTGCCGGACAGTACTTCAATGCACGATGCTGACGAGGAAGTGGTC
GTGGCCTATAGCTGCTCCCCCGGAACTTGGCATCAATATGGGACTCGTTC
CGGGAAGCGGAATCCATTGGCCGACAATATTTCCATAGGACCGTCCATGG
TATACCATGG
FMO05954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9634-RC | 3281 | CG9634-RC | 144..1278 | 9..1132 | 5100 | 97.5 | Plus |
| CG9634-RA | 3661 | CG9634-RA | 524..1658 | 9..1132 | 5100 | 97.5 | Plus |
| CG9634-RB | 3646 | CG9634-RB | 524..1643 | 9..1132 | 4865 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16744845..16745201 | 678..322 | 1770 | 99.7 | Minus |
| X | 23542271 | X | 16745515..16745833 | 327..9 | 1595 | 100 | Minus |
| X | 23542271 | X | 16744623..16744773 | 829..678 | 710 | 99.3 | Minus |
| X | 23542271 | X | 16729782..16730046 | 1092..838 | 685 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:15 has no hits.
FMO05954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:53 Download gff for
FMO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1644 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:53 Download gff for
FMO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1644 | 1..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:54 Download gff for
FMO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9634-RA | 516..1644 | 1..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:54 Download gff for
FMO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16729776..16730046 | 838..1099 | 91 | <- | Minus |
| X | 16744614..16744772 | 679..837 | 98 | <- | Minus |
| X | 16744845..16745195 | 328..678 | 100 | <- | Minus |
| X | 16745515..16745837 | 1..327 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:53 Download gff for
FMO05954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16639548..16639870 | 1..327 | 98 | | Minus |
| arm_X | 16623809..16624079 | 838..1099 | 91 | <- | Minus |
| arm_X | 16638647..16638805 | 679..837 | 98 | <- | Minus |
| arm_X | 16638878..16639228 | 328..678 | 100 | <- | Minus |
