FMO05955.5prime Sequence
1169 bp (1063 high quality bases) assembled on 2008-09-15
> FMO05955.5prime
CAGTCGACATGTGTGATGTCCGAAATCTAATTGACCTGACCGAATGGGAT
GAGCCCAGCAAGGAGGCGTTGCACGAAGAGCCGGAGGACTCTGTGGTGGC
CACGAACTTTGAGGTGCCCTACGATCCCTTCGATCTGATGGAGAAGGAAG
CTTGCATCAAGGGCATGACCTTGACGTCGCAGATCAAGGAAAAGGTGTCC
AGTGCCGAACGACAGTATCCGGATCTTGAGAGCGAGAGTCCTCCGGTTTG
CATGCAGACGGACACAGCGAATGCGTCCGCACCAGGATCAGGTGAAACAA
CCCAAAAGAAGCGCTCGAACAGCTCATTCCAGAAGCAGCTCCTCAAACTT
AATGCCTCGCGATCCGTGATCAACACCCCACCCCATAGTCGATCCAAAAC
AGAGTTTGAAAGAACAATACTGAACGAAAACCTGCAGATGCTAGCGGCAG
AGTCACCACTGAAGCTTATTGAGGACGACGACGTCCTGTCCACCAGTATC
AATTTCGAGGAAGACCTCAAAATGCTACGCATTCCGATCCTAGACGCGCT
AAACAATGCAGAATCCAAGGCAATAGCCGAAGACAATCACGGAAACGTAA
ACAAAATTGATGTCGTGATTCAGGAGGGTCAGAAAAGTCCACAGACAACA
ATCGAAAACCGATCAAATGGCAAGAGTTTGAGCCAGCTCCTGGAACAGCT
GAAGATCTTGGCACACGAACACGTCGAGAGGTCGAAGTGGCATTTGTTTG
ACTCGGCAATTGAATCCATTGCCGCGGTCATCTTCGGACCCAGTGGCTCT
TGTCCGGATGATAGGAAAGCCGAATCACTATACCATCGCTATACTCATAC
ACCCGCCAAGGAACATTCGATCTCGAACTTCAAGGCACAAAGACAAAGCG
TTCCCTGGATGCTAACCACATACAGGAGGAGGAGATCGATGTACAAGCAG
TAACGTTCAAAGCTTTCCCGATGCCATGGTCTGTCAACAGCCACGTTTGA
TGGCGAATCGCGACTAAATGCATTTGATAAGGACTTGCTTTCATCTCTAC
CATCATACCATCAATAACATCGATACCTTCAATAACCGGCCCGGTCAAGT
AACAAAAGGGCCATTATATTAACGAGATTGGTCGAAGAAAACATCGCCTC
ACAAGAATTAAGAACTGTC
FMO05955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3679-RB | 3215 | CG3679-RB | 121..1255 | 9..1140 | 5250 | 98.1 | Plus |
| CG3679-RA | 2760 | CG3679-RA | 121..1255 | 9..1140 | 5250 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16304251..16304976 | 160..884 | 3580 | 99.9 | Plus |
| X | 23542271 | X | 16305154..16305362 | 879..1084 | 820 | 96.2 | Plus |
| X | 23542271 | X | 16303990..16304143 | 9..162 | 770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:12 has no hits.
FMO05955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:37 Download gff for
FMO05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 112..1215 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:02 Download gff for
FMO05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 68..1171 | 1..1101 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:08 Download gff for
FMO05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3679-RA | 112..1215 | 1..1101 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:08 Download gff for
FMO05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16303981..16304142 | 1..161 | 97 | -> | Plus |
| X | 16304253..16304975 | 162..883 | 99 | -> | Plus |
| X | 16305159..16305377 | 884..1101 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:37 Download gff for
FMO05955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16198014..16198175 | 1..161 | 97 | -> | Plus |
| arm_X | 16198286..16199008 | 162..883 | 99 | -> | Plus |
| arm_X | 16199192..16199410 | 884..1101 | 95 | | Plus |
