FMO05956.5prime Sequence
1159 bp (1053 high quality bases) assembled on 2008-09-15
> FMO05956.5prime
CAGTCGACATGGCCAACAAGAACATGCGTAACACCACAACCAAAGTGGAG
GCCCTGATTGAGAGCTGTCGCAGCGAGGGCAAGTGGCACCGGGTCATCGA
GCTAACGGATGAACTGAAGACCGGGTCCCCGCACAATGAGTGCCTGGCCA
ACTTTCTGGTGGGGGAAGCTCGTCTGGAGAGTTACCTGGAGGAAAACGCT
CTCGCGTCAGACTCAAATTTTGGTCGCGCCAAGTCTGGATTGGCGGAGGC
CCGGCGTTTCCTTCACTTGGCTTTGGGTGAGAGTGGCCAGAAGGCGGGCA
TCGCCCTGGACGCCTATTTGCTGCTGGCCAAGCTGTGCTTTGCCTGCGGC
GAGTATGAGCAGAGTCTAGACAATTTCGTCAAGGCAGAACTCAACACGCT
TGCCGAGAAGGAGCTGACCCTTCGCAGCCTGAAGATCCTTGCGGAATCGT
ATGCCATCAAGGGATTGTGTCTGGAGCAGCAGACTACGAAGCCGTCATCT
AAGTTTAAGAAGGCCGAAAAGGACACGGAAATGATTAGCTGTTTTGAGCG
CGCATCTGATCTGGGGCTGCTCTATCTGCAGGAATACGATCTCGTTAGTG
GAAGCAGTGGCTCGTCCAACAACTCGACAGCTGGTTCTACGTTGAATGTA
AACGCCTCTACTGTGCAGCCGTCGAGCAGCAGTTTTGCAATCAGCAGTAC
AATACCGGCGAGTGGTCCAAGTGGACTGGAAATGAACCGCAGGATGGGCG
CCATCCTAGAGACCGCCCTGCAACGGGCACCCATAGTGCTTATTAAGACG
GAAAGCTTCAAGAGGCCGTTGAACGGTATCGAATCATGCTAAACGCCATC
GAAACGAGGGCTACTCAATCGTTGCGCCTCACGCTGGCCCGCCAGCTAGC
TGAGGTTCTTTTGAGAGGGGTCTCCGGCACGATTTACTCGCCTCCTTTAC
CGGAATCTGGAGTGGGACGCTGCGAGGAGATCCTCCAGAAACTTTGGAAA
CCGCGTAAATACCGCGCCCGCCAGCAGTTTAACCTCGGAACCAGCAGGAA
AGAGTATTCCGTTGCTACTCTAGCCGAGGCCATGGCTGTGAGAGAAATCC
GTATGTCCAAGATCCAGGTTAAACAGGCCGTCAGCATGCTATGGGACACG
TTCCGCCGC
FMO05956.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k14710-RB | 3049 | CG8325-RB | 182..1339 | 9..1152 | 5120 | 97.2 | Plus |
| l(2)k14710-RA | 3079 | CG8325-RA | 182..1339 | 9..1152 | 5120 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6212590..6213159 | 1092..533 | 2235 | 96.5 | Minus |
| 2R | 25286936 | 2R | 6213469..6213752 | 421..138 | 1420 | 100 | Minus |
| 2R | 25286936 | 2R | 6213812..6213941 | 138..9 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 6213216..6213327 | 533..422 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:04 has no hits.
FMO05956.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:30 Download gff for
FMO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 172..1231 | 1..1050 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:03 Download gff for
FMO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 168..1227 | 1..1050 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:55 Download gff for
FMO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k14710-RA | 172..1231 | 1..1050 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:55 Download gff for
FMO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6212634..6213158 | 534..1050 | 97 | <- | Minus |
| 2R | 6213216..6213327 | 422..533 | 100 | <- | Minus |
| 2R | 6213469..6213751 | 139..421 | 100 | <- | Minus |
| 2R | 6213812..6213950 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:30 Download gff for
FMO05956.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2100721..2100832 | 422..533 | 100 | <- | Minus |
| arm_2R | 2100139..2100663 | 534..1050 | 97 | <- | Minus |
| arm_2R | 2100974..2101256 | 139..421 | 100 | <- | Minus |
| arm_2R | 2101317..2101455 | 1..138 | 97 | | Minus |
