FMO05957.5prime Sequence
1184 bp (1044 high quality bases) assembled on 2008-09-15
> FMO05957.5prime
CAGTCGACATGCCCGATTCCGTGGAGGACACCTCCACAATCTCGCTGCGG
ATATGCCTGGAAGGACACGCGAACGCCCTGGCCCTGAATAAGGACAACAA
CCAGATTGCTTTGGCCGGAAGAAGCTTGCTTAAGGTGTACTCCATAAACA
GCAATGGCTTCACGGAATCGTGTAATATGCGCGGAAAGAACCAGAATCTT
AGCTACTCCGCCAACGATGTGGCCTGGTCCACCTTGGATAGCAATCTTTT
GGCTACGGCGGCCACGAACGGAGTGGTTTCCGTGTGGGATCTCTCCAAGT
TCGGCAGGCAGAAGCAGCTGCTTGTCTACAACGAACATGAGCGCACCGCT
CATACCGTGACCTTTCACAGCAGCGAGCCCAACATCCTGATCTCCGGTTC
TCAGGATGGCACCATCAAGTGTTTCGACATCCGATCGGATAAGTCAATCA
ACACCTACTTCTGCAACTCGGAATCAGTGCGGGATGTCAAGTTCAGTCCA
CACACACAAAACATATTCTCCGCCGTCTCCGAGAATGGAACTGTCCAGTT
GTGGGACATGCGGAAGTGGGACAAGTGCATGGTGCAGTTTACGGCGCACT
ACGGGCCAGTCTACACATGCGACTGGCATCCCACAAGGAATTGGCTGGCC
ACCGGAAGTCGGGACAAGCAGATCAAGGTGTGGAACATGGATGGCAGGCC
GGGATTGGAGCACACCATTCACACAATCGCCGTAGTGGGACGGGTTAAGT
GGCGACCAGAAAGAACTTATCACATCGCTAGTTGTGCCCTTGTGGTGGGA
CTACAGCGTTCATGTGTGGGACATCCGCAGACCCTACATCCCCTTTGCCT
CCTTCAACGAGCACACCAATGTGACTACTGGAATTGCGTGGCAGGGCAGC
GACTCGCACTGTCTTCTGTCCATCAGCAAGGACTCAACATTTACAACATG
CTTTTAGGATGCCACGAGGCCAGCGCTGAAGGCAAATGCCCAAGGGAGCT
AGCCTGGGCAGATTTGGGACATTCTCTTTGCCACAAGAATCAAGAATAAT
AAACCAGAACAGCGGTGCATCAATACCAGTTCTTTCTAGCTTCATCGCCG
TAAGAAGAATGTGCTTGCAGCATTCAGTTTCAATTGACCATCAAAATGTT
CAATCAGGGTAACGAACGGTTCGTATCCTAACGA
FMO05957.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7609-RB | 2699 | CG7609-RB | 94..1247 | 9..1153 | 5145 | 97.2 | Plus |
| CG7609-RC | 2702 | CG7609-RC | 94..1250 | 9..1153 | 5115 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29744184..29744823 | 766..127 | 3200 | 100 | Minus |
| 3R | 32079331 | 3R | 29743869..29744121 | 1018..767 | 1010 | 97.6 | Minus |
| 3R | 32079331 | 3R | 29744882..29744999 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:12 has no hits.
FMO05957.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:33 Download gff for
FMO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1243 | 1..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:05 Download gff for
FMO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 66..1219 | 1..1149 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:58 Download gff for
FMO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7609-RB | 90..1243 | 1..1149 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:58 Download gff for
FMO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29743789..29744121 | 767..1095 | 93 | <- | Minus |
| 3R | 29744184..29744823 | 127..766 | 100 | <- | Minus |
| 3R | 29744882..29745003 | 1..126 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:33 Download gff for
FMO05957.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25570604..25570725 | 1..126 | 96 | | Minus |
| arm_3R | 25569511..25569843 | 767..1095 | 93 | <- | Minus |
| arm_3R | 25569906..25570545 | 127..766 | 100 | <- | Minus |
