FMO05958.5prime Sequence
1159 bp (1015 high quality bases) assembled on 2008-09-15
> FMO05958.5prime
CAGTCGACATGACGGGCGAGACCAAGCTGGAGAAGAAGCCGCTGAAGCCG
GCGGCATCCGAAGGCGATGCCAAGGATCCGAAGGCCAAGAAGGATGAAAA
GAAGGACGGCAAGGACAAGGAGCAGCAGCCGGAGCTCTCCGACGAGGACC
AGCAGCTGCAGGAGGAGCTGGAGCTGCTGGTGCAGCACTTGCAGGAGCCG
GATGCCAAGCTCTACCAGCCGACGCTGGAGAGTATGGCCAAATTGATCAG
AGCCTCCACGACGTCGATGACCTCGGTGCCCAAGCCTTTGAAGTTCATGC
GCCCGCACTACGAAACCATGAAGACGGTGTACAAGCACATGCCCAATGAG
CAGGCTCGCCAGTTGTGCGCCGACATCATCTCAGTGCTCTCGATGACCAT
GGGCAGCGGCAAGGATTGCCTGGCCTACCGATTCCTCTGCGATCGCAAGC
AGCGCATCGGGGACTGGGGCCATGAGTATGTGCGTCATTTGTCTGGCGAA
ATTTCGGCCCACTATCACGATACAACGGGAGACTTTCGTGTACAGCTCAT
CGAACTGGTCAAGCAGATCATCCCGTACAATATGGAGCACAATGCCGAGG
CTGATGCCTGCGATCTGCTGATCGAAATCGATCACTTGCACCTGCTGAGC
GACTTTGTGGACGAGTCGGCCTATCCCTGCGTCTGTCTCTATCTGCAGTC
CTGCTATCCGTATGTTCCCGACCCGGACAACACCATTATCCTGGAAACCG
CGCTCCAGCTGTCGCGCAAGTTCAACCAGTACACACAGGCCATGCGACTG
GCGTGATGCTCAACGATATGGACAAGATCGGTGAGATCTTCAAGGAGCCC
AAGGAGCCGGGCATGCAGAAGCAGCTGGGCTTTATGCTGGCCCGCCACAG
ATTTGCCTGGAGCTGGATGAATTGGTGCCGACTACGATGATCTCATGGAG
ATCATGTCGAATGCTAATCTGACAAGCATTTCTCAATCTGGCCTCGGCGA
CTGACATCATGTAGCCAAACGCCTGAGGACATTACAGTCGCATTTGGACC
ACTCGCCCCTCCCGCTTGCAATCATCCAGTAGACCTCTCAGCAATCTGCG
CTTGCTTGTAATGGTTGTTACCGGTTCGGTTGACAATTGCCGTCGAAAAA
CGGAACAAT
FMO05958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn1-RA | 3041 | CG7762-RA | 140..1226 | 8..1084 | 4940 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19915190..19916247 | 8..1056 | 4670 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:13 has no hits.
FMO05958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:25 Download gff for
FMO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1220 | 8..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:09 Download gff for
FMO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 135..1215 | 8..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:09 Download gff for
FMO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn1-RA | 140..1220 | 8..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:09 Download gff for
FMO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19915190..19916222 | 8..1033 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:25 Download gff for
FMO05958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19908290..19909322 | 8..1033 | 98 | == | Plus |
