FMO05959.5prime Sequence
1197 bp (1011 high quality bases) assembled on 2008-09-15
> FMO05959.5prime
CAGTCGACATGGGGGACATGTTCCGTAGTGAGGAGATGGCACTCTGCCAG
ATGTTCATTCAGCCGGAGGCCGCGTATACCTCCGTATCTGAGCTGGGCGA
AACCGGCTGCGTGCAGTTCCGCGACTTGAATGTGAACGTGAACGCCTTCC
AGCGCAAGTTCGTCACCGAGGTGCGTCGCTGCGATGAGCTGGAGCGCAAG
ATCCGCTACATCGAGACGGAGATCAAGAAGGACGGCATCGTCCTGCCCGA
CATCCAGGATGACATTCCGCGTGCGCCCAATCCACGCGAGATCATCGATC
TGGAGGCGCATCTGGAGAAGACCGAGTCGGAGATGATCGAGCTGGCCCAG
AACGAGGTGAACATGAAGTCCAACTATCTGGAGCTGACCGAGCTGCGCAA
GGTGCTGGAGAACACGCAGGGCTTCTTCTCCGACCAGGAGGTTCTCAATC
TGGACTCCTCCAACCGAGCTGGAGGAGACAACGATGCTGCTGCTCAACAC
CGTGGCCGGCTTGGATTCGTTGCCGGTGTAATTAACCGGGAGCGAGTGTT
TGCCTTTGAGCGTATGCTGTGGCGCATCTCCAGGGGCAATGTCTTCCTCA
AGCGCTCCGATCTGGACGAGCCGCTGAACGATCCGGCCACCGGACATCCC
ATCTACAAGACCGTCTTCGTGGCCTTCTTCCAGGGCGAGCAACTGAAGAA
CCGTATCAAGAAGGTGTGCACTGGCTTCCACGCCTCGCTGTATCCCTGTC
CCAGCTCGCACAACGAGCGCGAGGAAATGGTTCGCAATGTGCGCACCCGC
CTGGAGGATCTGAAGCTGGTCCTTAGCCAGACGGGAGGATCATCGTAGCC
GCGTCCTGGCCACCGTGTCCAAGAATCTGCCCTCGTGTTCGATCATGGTC
AAGAGATGAAGCCATTTACCACACGCTGAATCTGTTCAACATGGACGTGA
CAAGAAGTGCCTGATTGGCGAGGGTTGGGTGCCCACCTATGATTTGCCCG
TGTCCAAAAGCTTCTGTCGATGGATCCTGCTGCAGTGGGGCAGCCACCAT
ACCCTCGTTCCTGACGTGATCGACCCAACGACCAGCGGCGACCTTAACAG
GACTACAAGTTACCGTGCTTTCGAAATCTGATGGATGCCTACGGAGTGGC
CTCGTACAGAAGAGGCAATCCGCCTGTACACTGGACTACCCTCCCCC
FMO05959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha100-2-RA | 3044 | CG18617-RA | 238..1421 | 9..1181 | 5255 | 97.3 | Plus |
| Vha100-2-RB | 3006 | CG18617-RB | 200..1383 | 9..1181 | 5255 | 97.3 | Plus |
| Vha100-1-RJ | 2950 | CG1709-RJ | 115..486 | 21..395 | 375 | 74.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18392162..18393205 | 1160..126 | 4245 | 97.2 | Minus |
| 3R | 32079331 | 3R | 18393272..18393388 | 125..9 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 11741549..11741776 | 7..234 | 345 | 76.8 | Plus |
| 3R | 32079331 | 3R | 29132141..29132239 | 141..239 | 315 | 87.9 | Plus |
| 3R | 32079331 | 3R | 18388745..18388923 | 833..655 | 295 | 77.7 | Minus |
| 2L | 23513712 | 2L | 11742211..11742385 | 657..831 | 275 | 77.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:11 has no hits.
FMO05959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:20:56 Download gff for
FMO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 189..1383 | 1..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:11 Download gff for
FMO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RA | 239..1433 | 1..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:39 Download gff for
FMO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha100-2-RB | 189..1383 | 1..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:39 Download gff for
FMO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18392139..18393205 | 126..1181 | 97 | <- | Minus |
| 3R | 18393272..18393395 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:20:56 Download gff for
FMO05959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14217861..14218927 | 126..1181 | 97 | <- | Minus |
| arm_3R | 14218994..14219117 | 1..125 | 96 | | Minus |
