FMO05961.5prime Sequence
1184 bp (1051 high quality bases) assembled on 2008-09-15
> FMO05961.5prime
CAGTCGACATGTCCAGCGAGGATCCCAGCTGTGTGGCAGTGGCCTTGCGC
GTGCGCCCCTTGGTGCAGTCCGAGTTGGATCGCGGCTGCCGGATTGCCGT
CGAACGATCGGCGGATGGAGCGCCACAGGTTACAGTCAACCGGAATGAGT
CGTATACGTACAACTATGTCTTCGACATTGACGACTCGCAAAAGGATCTA
TTCGAGACGTGTGTACAGGCCAAAGTGAAAAAGCTGTTAAATGGCTATAA
CGTAACAATCTTGGCATATGGACAAACGGGTTCCGGAAAGACCTACACTA
TGGGCACCGCCTTCAACGGAGTGTTAGATGACCATGTGGGCGTTATACCA
CGCGCCGTTCATGATATATTCACAGCCATTGCGGAAATGCAGAGCGAATT
TCGTTTTGCTGTCACATGCTCTTTTGTGGAGCTCTACCAGGAGCAGTTCT
ATGACCTTTTTTCGTCGAAAACTCGGGACAAGGCCACCGTAGACATCAGG
GAGGTCAAGAACCGTATTATCATGCCGGGCCTCACCGAGCTAGTGGTCAC
ATCCGCCCAGCAAGTGACCGATCATCTGATCCGCGGCTCAGCCGGACGGG
CTGTGGCCGCCACGGCTATGAATGAAACCTCTTCAAGATCCCATGCCATA
TTCACATTGACGCTAGTAGCCACCAAGCTGGACGGCAAGCAATCCGTTAC
CACGTCCAGGTTCAACCTGGTGGATCTGGCTGGTTCTGAACGCTGCTCAA
AGACCCTAGCCAGCGGCGATCGGTTCAAAGAGGGTGTGAACATCAATAAG
GGTCTTCTGGCCCTGGGCAACGTGATCAATGCCCTGGGATCTGGCCAGGC
CGCTGGCTACATACCCTATCGCCAGTCCAAGCTGACGCGTCTGCTGCAGG
ACTCCCTGGGCGGTAATTCCATAAGGCTGATGATTGCTTGCGTCAGTCCC
GCCGACTACAACGTGGCCGAGACATTGAGCACCCTACGCTTATGCGGATC
GAGCACTGCAATCAAAACAAGCCAGTTGTTCAATCTCGAATCCGCATGGC
GGCGAAGTTAATATGCTGAAGAACGTCATTCAAAAGCCTGCGTGTAAGAG
CTATTGTCCGCGCAAAGATGAGAATTCCTTAATACGCTGTGGAACCCCAG
GCTTGGGTGCCATCCCGGGAGGAGTCCCTACTTG
FMO05961.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Klp3A-RB | 4090 | CG8590-RB | 225..1400 | 9..1180 | 5300 | 97.5 | Plus |
| Klp3A-RA | 4527 | CG8590-RA | 374..1549 | 9..1180 | 5300 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2602918..2603598 | 689..9 | 3405 | 100 | Minus |
| X | 23542271 | X | 2602358..2602622 | 1108..841 | 855 | 93 | Minus |
| X | 23542271 | X | 2602694..2602845 | 840..689 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:41:12 has no hits.
FMO05961.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:33 Download gff for
FMO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp3A-RA | 366..1535 | 1..1168 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:08 Download gff for
FMO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp3A-RA | 366..1535 | 1..1168 | 97 | -> | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:40 Download gff for
FMO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Klp3A-RA | 366..1535 | 1..1168 | 97 | -> | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:40 Download gff for
FMO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2602694..2602845 | 689..840 | 100 | <- | Minus |
| X | 2602293..2602622 | 841..1168 | 91 | <- | Minus |
| X | 2602919..2603598 | 9..688 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:33 Download gff for
FMO05961.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2496326..2496655 | 841..1168 | 91 | <- | Minus |
| arm_X | 2496727..2496878 | 689..840 | 100 | <- | Minus |
| arm_X | 2496952..2497631 | 9..688 | 100 | | Minus |
