FMO05962.5prime Sequence
893 bp (869 high quality bases) assembled on 2008-09-15
> FMO05962.5prime
CAGTCGACATGCACCTCAGCGCGGATATTTCCAGCGCCCTTCAGCAGATC
GAGGCAGTGAAGAAGGGCATCGATGAGTCCGACGACCCCAAGCTGCAAAT
GCAGACGGCCGAGAGCCTTAGCACCATTCTGGGCATTCTGCAGGATCCCG
TTTTCCGCACCATCGTCCACGTGCAGGACTCGTTGTCCGAGCTGAACGCC
CAGCTGGCTCAGCATCCGTCCATGTTGCCCAACGACTTCGACATCGATGT
GGCCGGCAACCTTGTACTCAGTCTGAATGGTGGCGAGGTGATGTACGACT
TTGACGAACAGCGCTCTTCCTCGCACTCCCATTCGGCTCCGGGCAGTCCA
GATAAGTCCGGAGGCGTCGGCGAGGAGCCGCGCCCGCAGAGCCAGAACTC
CAAAGGAGCCGGAGTGGCGGATCTCTACGCCACGGACTACGCTCAGATCC
AGGCCATAGAGCTGGTCAACGACGGCACGGGTCTCGGATTCGGTATTATT
GGAGCTCGCAACTCGGGAGTGATTGTAAAAACCATCCTGCCGGGTGGCGT
GGCCGATAAGGACGGACGCTTGCGCTCGGGGCGACCACATCCTCCAGATT
GGAGACGTCAACCTGCACGAAATGGTATCCGAACAGGTGGCTGCCGTGCT
GAGACAGTCTGGAACCCACGTCCGCCTAGTGGTTGCCCGTCCCGTTGAGC
AGAGCGTGCCTACGCCCCAGTACGCCCTGGAACCGGGCACTGCTTGTGGT
GCCCACGCGCGTCCTCGTCGATCCTGCCGAGCTGGAGCGGTACCTCATAT
CTACCGGCTATCCCGGAAATCTTTGGGCGAGAGCTCCACGGCCTCCCACT
CCGCAGACCACCACGGAAGACGATTGTTTCCGTTATCGCGGCG
FMO05962.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Patj-RB | 3236 | CG12021-RB | 261..1140 | 9..893 | 4255 | 99.1 | Plus |
| Patj-RA | 3264 | CG12021-RA | 289..1168 | 9..893 | 4255 | 99.1 | Plus |
| Patj-RC | 3266 | CG12021-RC | 291..1170 | 9..893 | 4255 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1799149..1800028 | 9..893 | 4130 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:27 has no hits.
FMO05962.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:49 Download gff for
FMO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 285..1170 | 1..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:10 Download gff for
FMO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RB | 249..1134 | 1..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:05 Download gff for
FMO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Patj-RC | 285..1170 | 1..893 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:05 Download gff for
FMO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1799143..1800028 | 1..893 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:49 Download gff for
FMO05962.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1799143..1800028 | 1..893 | 98 | | Plus |
