FMO05963.5prime Sequence
904 bp (868 high quality bases) assembled on 2008-09-15
> FMO05963.5prime
ATAAAACAAAGTTATCAGTCGACATGTCGGCTAACGAAATGGCGCTTGTG
AAAATCTGCATATTTGCTTTGGCTTTGGCCGTGGGTCTGACCGCAACCAA
GGCGCAGGAGTCGAGAGGCGGTTTCCGTGGCAGTAACAGCCAGTTTCGCG
TGGGTCCTGGCCATCCGCCCTCGCAGCGCCACCTGCCGCCCCGAAACCGT
GATCCCGTCCAGGAGGCATCGGTGGTGCCAAAGAGCAAACAGACGGCGGC
GGAGAAGGAGTACGAGCCCACCGAGGAGTGCCCGGAGCCCAATGGCTTCT
ATCCGGACAGCAAGCAGTGCGACAAGTACTACGCCTGCCTGGATGGTGTG
CCCACGGAGCGACTGTGCGCCGATGGCATGGTCTTCAATGACTACTCACC
CATCGAGGAGAAGTGCGATCTGCCCTACAACATTGACTGCATGAAGCGGA
GCAAGCTACAAACACCTCAGCCATCGCTTCACTGTCCCCGGAAGAATGGA
TACTTTGGCCACGAGAAGCCAGGCATCTGCGATAAGTTCTACTTTTGCGT
GGATGGTCAGTTCAATATGATTACCTGCCCGGCTGGACTGGTCTTCAATC
CCAAGACGGGCATATGTGGCTGGCCTGACCAAGTGGGCGTCACTGGCTGC
AAGTCGGAGGATGTCTTCGACTTTGAGTGCCCCAAGGTGAACGAGAGCAT
CAAGTGACACATCCCCCGCTACGCCGATCCCAACGATTGCCAGTTTCTCT
CTACGTCTGCGTCACGGAAGATCTGGCCCAGGCGAAAACGGATGGCAAAC
TGGGCCCAGGTCTTCGACGAGGAGAAGGAGACCTTGCGACTGGGCACGCA
GGGTGCCAGATTGTGCCCACTGGTACAAGGATCCGTCTGAACGACAGGAG
CTGG
FMO05963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| obst-B-RA | 1149 | CG4778-RA | 55..928 | 24..904 | 4035 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10038218..10038614 | 460..863 | 1505 | 96 | Plus |
| 2L | 23513712 | 2L | 10036817..10037074 | 84..341 | 1290 | 100 | Plus |
| 2L | 23513712 | 2L | 10037161..10037279 | 341..459 | 595 | 100 | Plus |
| 2L | 23513712 | 2L | 10032893..10032955 | 24..86 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:15 has no hits.
FMO05963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:52 Download gff for
FMO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 51..928 | 18..904 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:11 Download gff for
FMO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 47..924 | 18..904 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:49 Download gff for
FMO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| obst-B-RA | 51..928 | 18..904 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:49 Download gff for
FMO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10036818..10037073 | 85..340 | 100 | -> | Plus |
| 2L | 10037161..10037279 | 341..459 | 100 | -> | Plus |
| 2L | 10038218..10038614 | 460..863 | 96 | -> | Plus |
| 2L | 10032889..10032953 | 18..84 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:52 Download gff for
FMO05963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10032889..10032953 | 18..84 | 94 | -> | Plus |
| arm_2L | 10036818..10037073 | 85..340 | 100 | -> | Plus |
| arm_2L | 10037161..10037279 | 341..459 | 100 | -> | Plus |
| arm_2L | 10038218..10038614 | 460..863 | 96 | -> | Plus |
