FMO05964.5prime Sequence
1150 bp (987 high quality bases) assembled on 2008-09-15
> FMO05964.5prime
CAGTCGACATGGACAGTAGCAGTGGAAGCCAAGGAAATGGCAGTTTCATG
GACCAGAACTCGCTGGGCATCCTGAACATGGACAATCTAAAGGTCTTCGG
CGACTTGTCCAGCTTCAGCAAAAGTGGAAGGAGGAGCGGCACTGGTCGGG
ACTCTCCCGCCGTCCACGAGCGGCTCCGAGAAGAACGACTGCGTGCGCTG
GAGACACTGGAAAAGCCCCGACCGTCGCGTTCCAGCCAAGCAAAGAGCAC
TGCCCTCCAGATGCGCTTGTCCACAAACATCTCGGAGCTGGTAACAGACG
ACACCATCGATCTGAACAGCAGCAGCTCCTTTGCTTTGGTCACGCCCGCC
ACCAAGGGCACAAACATCTCTTTTGAGCCTGCGGAGATCACCGGCAGGTC
CACACTCTGCCAGGCGGGAAAACAGCGCCGCAGGGAGAAGCCATCCCTGT
CGGTGGCCGAAATTCTAAAGTCATCCTTCGTTGAGAAGGCTCGCCTGTTG
GAAAGGAAGCTGCAGGATGCCAGTCAGGCGGAGGCCAGCTATCACTTATC
ACGTGGCAGCTCCAGCAGCCTCTCAGATTCATTCAACTGCTCGCGCAGCT
TACCGCGCACTGCGGACATGAGTGAACTGAGTCTTAACGGAGGTGGGGGA
TTTTCCTTTGGATCTGCCTCGTTGGCGGCGGAAGGCCAGGATGAGAGCTT
TGCTCCCGCCGAGCTAATGCAGTCCAAATTGGTGCTCGGTGAAATCTCCT
GGGCGCGGAGTTCACGGCCATGCCGACGCCACGTTGAGCACACAGGCGTT
TGAAGAAGATTGCCGCAACAACATCCGAGATAGAAACCTCGGGTGTCCCA
TTCTGTCTTGGCCGGAGATCCAGACTTTTCGCTGGGCAACTACTTCCAGA
CGCGTTCGGAAAATATATGGGACATTGTGAGCATTAGCAGCCCGATCGTT
CGCCGAACCAACCAACGGCTATTGAACCAGAAAGTACGTGACACTGATCG
GTTGGCGAGAAGACCCACAGCCAGACAATAAACCATACACTAACGGATGC
CATAACTGCTCGAATCCGACGCAATCTTATGCTTAAGAGTGCACCAGATC
GATGAACTGCCTAAGAGCAGGATTGCCTGCAGCCAAGAGACCAGGTTCGC
FMO05964.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spd-2-RA | 3686 | CG17286-RA | 49..1201 | 9..1143 | 4995 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16594071..16594821 | 842..93 | 3595 | 99.5 | Minus |
| 3L | 28110227 | 3L | 16601738..16602488 | 842..93 | 3445 | 98.1 | Minus |
| 3L | 28110227 | 3L | 16593755..16594002 | 1088..851 | 645 | 92.4 | Minus |
| 3L | 28110227 | 3L | 16601575..16601669 | 945..851 | 430 | 96.8 | Minus |
| 3L | 28110227 | 3L | 16594882..16594966 | 93..9 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 16602547..16602632 | 94..9 | 325 | 91.9 | Minus |
| 3L | 28110227 | 3L | 16601453..16601549 | 1088..998 | 210 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:33:20 has no hits.
FMO05964.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:48 Download gff for
FMO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 42..1158 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:13 Download gff for
FMO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 70..1186 | 1..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:48 Download gff for
FMO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spd-2-RA | 42..1158 | 1..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:48 Download gff for
FMO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16593735..16594002 | 851..1106 | 91 | <- | Minus |
| 3L | 16594064..16594820 | 94..850 | 99 | <- | Minus |
| 3L | 16594882..16594970 | 1..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:48 Download gff for
FMO05964.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16586835..16587102 | 851..1106 | 91 | <- | Minus |
| arm_3L | 16587164..16587920 | 94..850 | 99 | <- | Minus |
| arm_3L | 16587982..16588070 | 1..93 | 95 | | Minus |
