FMO05965.5prime Sequence
985 bp (11 high quality bases) assembled on 2008-09-15
> FMO05965.5prime
CAATCCACATGGTCGCGGCTGCTCCTACCGGCGAGGAAGATCTCAAACAG
GACACGCCCTACTTGATTGAACTATTGCGTCAGGCGAAGACTGCTGACAT
ATTTAGCTTTATGGACCAGAAGGCGGATCCTTGCAACGATTTCTACCCAT
TCTCCTGTGGCAATTATAAGCGCATCAACTCGGCTTTGATCATGCTTGTG
GTCACCACTGGAGTATTCAAGACTCTGACCAAAGGACTTAACCGAGAGAT
CCTGAAGATGCTCAACACACCCCACGATTCCCACGACACTCCGGAAGACA
TTAAGGTGAAAATTTCTACAAGTCCTGTCTCCAGATCAAGGAGCTCAACT
CCACGTACAGCGAAAAGCTGAAGCGGCTCCTTGCAAAATTTGGAACGATG
CCGCTGCTCGAAGGATCCTCCTGGCAGGAGGACCACTTCGACTGGCTGAA
TACTACTGCTCGCATGGGCTACCGATACGGGATAACTCCCATTTTCGGCA
TTGAGGTGAACTAAGACTTGACCAGCAAGACCCGGAATCGAATATACTTG
GGTCAACAGGACTTCCCGCTGGAGGCACGGTCCATGTGCGTCGATGATGC
ATCAGCAGTATATCGTCAGAAATATCGTAATAATATCCAGCGCATCTTGC
AACGTTACCTGTGCGTGAAGATGGATTTGGCCGAAAAAACGGTCAAGGAA
CTGATTGACTTTGAGGTGGACTTGGCTCAAGGACTGGTGGACGAGAGTGA
ATGACTGTTGTGTGTGAATTTGACCCACTTACTCACAGCGGACAAAATCC
AAATAAGGTACTCCCCACCTTGGATATCTACCGATTGCTATTTGTGAGCA
TGGGGAGAGCGCATTTCAGACCACATCTACTAAATAACATCTTTATGACA
GAACTTGCTCGAGTCATCAAGCGTACTCCGAACGACATTGCACCAACTAA
ATATTATTCCGGCTGATCGGGGAACTTGGGAGACC
FMO05965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14526-RC | 2323 | CG14526-RC | 73..1055 | 9..984 | 3735 | 92.8 | Plus |
| CG14527-RA | 2154 | CG14527-RA | 85..540 | 31..485 | 1415 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28883765..28884735 | 9..973 | 3480 | 92.9 | Plus |
| 3R | 32079331 | 3R | 28880876..28881331 | 31..485 | 1390 | 87.5 | Plus |
Blast to na_te.dros performed 2014-11-28 19:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 5320..5363 | 553..510 | 112 | 72.7 | Minus |
FMO05965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:07 Download gff for
FMO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 73..1055 | 9..985 | 92 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:24 Download gff for
FMO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RA | 63..1045 | 9..985 | 92 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:48 Download gff for
FMO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14526-RC | 73..1055 | 9..985 | 92 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:48 Download gff for
FMO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28883765..28884747 | 9..985 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:07 Download gff for
FMO05965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24709487..24710469 | 9..985 | 92 | | Plus |
