Clone FMO05967 Report

Search the DGRC for FMO05967

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:59
Well:67
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNep2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05967.5prime Sequence

1168 bp (955 high quality bases) assembled on 2008-09-15

> FMO05967.5prime
CAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGCGTCGCCGT
AACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATGTTCGTGGT
GCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAGGACGAGTC
CCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCACCACCATC
AACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGCGATTCGGG
CGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCACCGTTTTGC
GGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACGAGTTCGCC
TGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAGGTCTCCAT
CAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTTGAAGGACA
TCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCCGACTGCCC
AACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAGACCCTGGG
CCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTGGCCGCTGA
TCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGCAGGAGCAG
GTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATCATCGACTT
TTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTATAGATCTGG
ACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAGGATTAATG
AAGACGCTGGTGACGGCATACTACAGTATATGGTTGACATCGCCGTTCTT
TTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTTATCTTTGGA
GTCGAGGATGGCGCTGGCCAATATCTCCTGGCCCAACGAAAAGCGACGCA
CTCCTCTGGCTGTACAATCTAAGACTCCAGCGCAGCTCAGGCCGCCTACC
CTACGTGCAGTGGGTGGACTACTGAACGCCCTGCTGCCGGAAGGGACTGA
ACGTGCCGAGACAATGATCAACCTGTTCGGTGCCCACCTCTTCAGGAACC
TTGCAAGCTGCGGGCCAAAACGCCGAAGCGTGTCATTGCCCATACTAATG
TTCTGGTGCCTTTACACG

FMO05967.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Nep2-RC 3103 CG9761-RC 315..1474 7..1156 5145 97.4 Plus
Nep2-RB 2796 CG9761-RB 315..1474 7..1156 5145 97.4 Plus
Nep2-RA 2763 CG9761-RA 315..1474 7..1156 5145 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4723796..4724301 531..26 2530 100 Minus
3R 32079331 3R 4723515..4723729 746..532 1075 100 Minus
3R 32079331 3R 4723204..4723380 922..747 700 94.4 Minus
3R 32079331 3R 4722923..4723150 1140..923 360 88.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:49:32 has no hits.

FMO05967.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:33 Download gff for FMO05967.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 309..1474 1..1156 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:26 Download gff for FMO05967.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 304..1469 1..1156 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:34 Download gff for FMO05967.5prime
Subject Subject Range Query Range Percent Splice Strand
Nep2-RA 309..1474 1..1156 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:34 Download gff for FMO05967.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4723204..4723380 747..922 96 <- Minus
3R 4723515..4723729 532..746 100 <- Minus
3R 4723796..4724301 26..531 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:33 Download gff for FMO05967.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 548926..549102 747..922 96 <- Minus
arm_3R 549237..549451 532..746 100 <- Minus
arm_3R 549518..550023 26..531 100 <- Minus