FMO05967.5prime Sequence
1168 bp (955 high quality bases) assembled on 2008-09-15
> FMO05967.5prime
CAGTCGACATGCAGACGGTAATCCAAAACCCCAACTGGTGGCGTCGCCGT
AACAAATTGGAAAAAAGTCTGCTGGTCTCGCTGGGCATCATGTTCGTGGT
GCTTGCTACCGGGTTCGGTCTCTGGATTGGCAAAGTGCTGAGGACGAGTC
CCCCGTCGAATCCCCAGGCCACTGCTCTCCACGGCGACAGCACCACCATC
AACCAGGTTCCAACGGGCACCGCCTCGAAGGGCAAGTCGGGCGATTCGGG
CGACGTGTGCCTCACCCAGGAGTGCATCCACACGGCTTCCACCGTTTTGC
GGAAGATGAAGCCCGAGGTAGAGCCGTGCGACAACTTTTACGAGTTCGCC
TGCGGCACATACCTTGAGGAGGAGAACATCCCCGACGACAAGGTCTCCAT
CAGCACCTTCTCCGTGATCTCCGACAAGCTGCAGGAGCAGTTGAAGGACA
TCATCACCGCGGAGCGACCGGAAACGGAGCCGAAGCACTTCCGACTGCCC
AACCTGCTTTACAAGGCCTGCATGAACAAAACTCTGATCGAGACCCTGGG
CCCTGAGCCCATAACTCGCGTGGCCGAGAGGCTGGGCGGCTGGCCGCTGA
TCAAGGGAGACTCTTGGAACGCGGACGACAGCTGGACTTGGCAGGAGCAG
GTCAAGAAGTTCCGCACCGCCGGTTTTAGCATGGACTACATCATCGACTT
TTCAATCGGAGTGGATTTGCAGAACAGCACTAAGCGGCTTATAGATCTGG
ACCAGTCCTCCCTGGCCTTGAGTCGCGAGTACCTCGTGAAAGGATTAATG
AAGACGCTGGTGACGGCATACTACAGTATATGGTTGACATCGCCGTTCTT
TTCGGAGCAAATAGGGACTTGGCCAAGACGGAGCTGCTGTTATCTTTGGA
GTCGAGGATGGCGCTGGCCAATATCTCCTGGCCCAACGAAAAGCGACGCA
CTCCTCTGGCTGTACAATCTAAGACTCCAGCGCAGCTCAGGCCGCCTACC
CTACGTGCAGTGGGTGGACTACTGAACGCCCTGCTGCCGGAAGGGACTGA
ACGTGCCGAGACAATGATCAACCTGTTCGGTGCCCACCTCTTCAGGAACC
TTGCAAGCTGCGGGCCAAAACGCCGAAGCGTGTCATTGCCCATACTAATG
TTCTGGTGCCTTTACACG
FMO05967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nep2-RC | 3103 | CG9761-RC | 315..1474 | 7..1156 | 5145 | 97.4 | Plus |
Nep2-RB | 2796 | CG9761-RB | 315..1474 | 7..1156 | 5145 | 97.4 | Plus |
Nep2-RA | 2763 | CG9761-RA | 315..1474 | 7..1156 | 5145 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4723796..4724301 | 531..26 | 2530 | 100 | Minus |
3R | 32079331 | 3R | 4723515..4723729 | 746..532 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 4723204..4723380 | 922..747 | 700 | 94.4 | Minus |
3R | 32079331 | 3R | 4722923..4723150 | 1140..923 | 360 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:49:32 has no hits.
FMO05967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:33 Download gff for
FMO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 309..1474 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:26 Download gff for
FMO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 304..1469 | 1..1156 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:34 Download gff for
FMO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nep2-RA | 309..1474 | 1..1156 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:34 Download gff for
FMO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4723204..4723380 | 747..922 | 96 | <- | Minus |
3R | 4723515..4723729 | 532..746 | 100 | <- | Minus |
3R | 4723796..4724301 | 26..531 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:33 Download gff for
FMO05967.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 548926..549102 | 747..922 | 96 | <- | Minus |
arm_3R | 549237..549451 | 532..746 | 100 | <- | Minus |
arm_3R | 549518..550023 | 26..531 | 100 | <- | Minus |