FMO05968.5prime Sequence
1164 bp (1040 high quality bases) assembled on 2008-09-15
> FMO05968.5prime
CAGTCGACATGGAGAGAGCAGGCCTCTTGGCCGTTTTGGCACTGTGCTGC
GCCTTTGGCGTCTTCGCCGCTGCCACGCCCCTTTTGGGCTCCAGCAAGTG
CACCTGGGGACCCTCCTACTGGTGCGGAAATTTCAGCAACTCCAAGGAAT
GTCGTGCCACCCGCCACTGCATCCAAACCGTTTGGGAAACCCAAAAGGTG
CCGGTGGACACGGACTCCATCTGCACGATATGCAAGGACATGGTTACTCA
GGCCCGCGACCAGCTGAAGAGCAACCAGACAGAGGAGGAGCTGAAGGAGG
TCTTCGAGGGCTCCTGCAAGCTGATTCCGATCAAGCCGATCCAGAAGGAG
TGCATCAAGGTGGCCGATGACTTCCTGCCCGAGTTGGTCGAGGCCCTGGC
CTCGCAGATGAATCCAGATCAAGTTTGCTCTGTGGCCGGACTTTGCAACA
GTGCTCGCATCGACGAATTGTATAAGAACGGCATTCAGGCTGGTCTTGAT
GGAACCGTCCAGAATGAAGATGACAGCTCCGAGGAGACCGAGTTGGCCAT
GCAGCCTAACCAACTTTCCTGCGGCAACTGCAACCTGCTTTCCCGCCTGA
TGCACTCGAAATTTGCGGCTACCGATCGCGATGACATGGTGGAAACGATG
CTTCATATGTGCGGATCGCTATCTAGTTTCTCAGACGCCTGTGCCAACAT
TGTGCTCACCTATTTTAATGATATCTACGACCATGTGAGCAAGCACTTGA
CCACGGATGCCGTGTGCCATGTGTCCGGAGTGTGTGCCTCCAGATATCAC
CAGCATGAAGAGGAAAAGCACCCGCAAGAAGCCTTAGTTGCCTTGGATGC
CGGCGATGATATTCCATGCGAACTATGCGAGCAACTAGTAAGCACCTTCG
CGACGTCTTGGTGGCCAACACCACTGAAACGGAGTTCAAGCAAGTTATGG
AAGGATTCTGCAGCAGTCAAAGGGAATCCAAGGACGATGCCTTACCATGT
TGACCAATACTACCATGTGATTTACAGACTCTGGTCAGCAAGTAGATGCC
AATGAGCCTGCTGCATGATCGGCATTGGCCAAAGAACTCCGCCCTCCTCG
ATAAAGATGTCCCAATCATGCCCCTCTGCCGGTTATTGACCGCTAGGTTA
AGATTCCCCATCGG
FMO05968.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sap-r-RA | 3440 | CG12070-RA | 130..1294 | 9..1163 | 5305 | 97.9 | Plus |
| Sap-r-RB | 3349 | CG12070-RB | 87..1203 | 57..1163 | 5065 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30885820..30886547 | 1139..420 | 2945 | 97.4 | Minus |
| 3R | 32079331 | 3R | 30886622..30886907 | 419..134 | 1430 | 100 | Minus |
| 3R | 32079331 | 3R | 30888661..30888740 | 136..57 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 30888884..30888933 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:30 has no hits.
FMO05968.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:11 Download gff for
FMO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 130..1272 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:27 Download gff for
FMO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 141..1283 | 9..1142 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:54 Download gff for
FMO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sap-r-RA | 130..1272 | 9..1142 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:54 Download gff for
FMO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30885816..30886547 | 420..1142 | 97 | <- | Minus |
| 3R | 30886622..30886904 | 137..419 | 100 | <- | Minus |
| 3R | 30888661..30888739 | 58..136 | 100 | <- | Minus |
| 3R | 30888885..30888933 | 9..57 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:11 Download gff for
FMO05968.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26711538..26712269 | 420..1142 | 97 | <- | Minus |
| arm_3R | 26712344..26712626 | 137..419 | 100 | <- | Minus |
| arm_3R | 26714383..26714461 | 58..136 | 100 | <- | Minus |
| arm_3R | 26714607..26714655 | 9..57 | 100 | | Minus |
