FMO05969.5prime Sequence
1143 bp (1005 high quality bases) assembled on 2008-09-15
> FMO05969.5prime
CAGTCGACATGAACTGGCACAAGGGCAACATTGCGGAGGCCGTGGCGGCA
TCAAAGGCCAAGGGCGCCGTGTTTGTCGTCTTCATCGAGGGCCAGGACGA
AATGACCCGAAAACTAGAGCGGTTCGTGGATGACAGTCAGGTGCGCTCCC
GCCTGGAAACCTCCGATTTTGTCGCCATCAAAGTCCAGGGAAATAGCTCC
GCCTACGGACAGTTCATGTCGTTATACAAAATCGTGCCAATTCCCTCGCT
CTTCTTTATTGGCAAAACGGGTACACCTCTGGAGATAGCCACTGGGGTTA
CGGCCAGCGTAGATGAACTGACGGAAAAGATCGATAAGGTTCTGATCCTG
GCGGGAAAACGAACCGAGCCTGTGGCAGCCAGCAGCTCTTCATGTGCGAA
GACACTTGACCCCAATGAAGTCAGGAGCTTCGCCGGAGCAGATGGCTCAA
GCAGCACTGGGGAATCTCAAGTAGTTCAAACAGCATCAGAAAACTTTAGA
GATCCTGAAACCACCTCAGTTTCAAACTCACCAACTGGAGGTGTGGAGGA
GGCCAAGACGAATCCACCAAATTCTCCTGTAGCAGCCAGCTTGGCATCTA
TACCCGCTGCTGTATCAACCTCCAGTTTGGAAGGAAAATCAGGATCAGAG
GCAGAGGCTGCTTCTCCCACCGCTTTGGCGGCCGAAAAGAGAGCAGCAGC
GAGCAAAGTGGAGGGTTCAGCTACCACATCCGGGGCAGCTGCTCGGAATT
TTGCCACTAATAATCTTATACCGGCTGTGCCGCTAATGACACCTGCTGTC
CCAGTTCCAACACAACGACCGCTCGAAGCCCAGGACAACACCGAATCCGA
GGAAAGGTTGGCCGAAGTCAGGAACATTCTGGAGCAAAAGCGAAAGGAGC
GTGTGGAGGAGGAGAAACGTATGGAGAAGGAGAACGAGCTGAGACGACGC
ATGTACGGAAGGAGGCACAGAGCCACAGGCAAGGCCAAGAGCAGGAGCTC
CAAGAATATGCAGAACAGATTAGCGTGAGGGTCAGGAGGAGCTGGCGGCA
AGGGAGCGCATTCTGGCCAAATTGCAGCGATCGGCGAGCAGGCCCAACGT
TTTAATACGCCCGAATTAGCAGCACAGACAATTCGGTGGCGGT
FMO05969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8042-RA | 2173 | CG8042-RA | 89..1234 | 7..1142 | 5285 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7973650..7974185 | 1013..481 | 2410 | 98.3 | Minus |
| 3L | 28110227 | 3L | 7974301..7974558 | 483..226 | 1290 | 100 | Minus |
| 3L | 28110227 | 3L | 7974628..7974763 | 225..90 | 680 | 100 | Minus |
| 3L | 28110227 | 3L | 7974819..7974903 | 91..7 | 425 | 100 | Minus |
| 3L | 28110227 | 3L | 7973448..7973573 | 1142..1022 | 280 | 88.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:23:41 has no hits.
FMO05969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:35 Download gff for
FMO05969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 83..1234 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:29 Download gff for
FMO05969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 100..1251 | 1..1143 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:31 Download gff for
FMO05969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8042-RA | 83..1234 | 1..1143 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:31 Download gff for
FMO05969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7974820..7974906 | 1..90 | 95 | | Minus |
| 3L | 7973650..7974182 | 484..1013 | 98 | <- | Minus |
| 3L | 7974301..7974558 | 226..483 | 100 | <- | Minus |
| 3L | 7974628..7974762 | 91..225 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:35 Download gff for
FMO05969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7967920..7968006 | 1..90 | 95 | | Minus |
| arm_3L | 7966750..7967282 | 484..1013 | 98 | <- | Minus |
| arm_3L | 7967401..7967658 | 226..483 | 100 | <- | Minus |
| arm_3L | 7967728..7967862 | 91..225 | 100 | <- | Minus |
