FMO05971.5prime Sequence
1143 bp (1019 high quality bases) assembled on 2008-09-15
> FMO05971.5prime
CAGTCGACATGTCGGCAACGAGGTTTTTGAGTGCCGTTGGCCAAATTTCG
CGACAGCAATTGCTGCAGAATAAGTGCACCAGAGCCCTGCCCATTTCGGC
CCAGCTTCTCCAGAGGCGCCGCCTAATGTCCACGAATCCCGCACCGGTTG
CCAACAAGCATCTCCACACCAAGGTGGTCAATGGAGTGCTTGTGATCAAG
ATCGACTCACCCAATGCCAAGGTGAATTCCCTGGGCTCCGAAGTGAGCGA
TGAGTTCGAGCGAGTGATTAAGGACCTGGAGACGAATCCTGCCGTCAATT
CCGCCGTGCTGATCTCGGGCAAACCGGGCTGCTTTGTGGCCGGAGCCGAC
ATCGGGATGCTGGAAGCATGCCAGACGGCGGAGGAGGCCACGCTGATCTC
CCACGGCGCCCAGGTGATGTTCGATCGCATGGAGCGCAGCAAGAAGCCCA
TTGTGGCCGCCATCAGCGGAGTCTGTCTGGGTGGTGGTCTGGAACTCGCC
CTTGCCTGCCATTACCGCATTGCCACCAAGGACAGCAAGACCAAACTGGG
TCTGCCCGAGGTCATGCTGGGTCTCCTGCCCGGCGGCGGTGGCACCGTCC
GCCTGCCCAAGCTTACATCCGTGCCCACGGCTCTGGATATGGAGCTGACA
GGCAAACAGGTGCGCGCCGATCGCGCCAAACGACTGGGCATCGTGGATCT
GTTGGTGGATCCCCTAGGTCCTGGACTCCAGCCTGCTGAGCAAAACACTA
TCGAGTACCTGGAGAAGACCGCCGTGCAGTCGCCAACGATCTGGCTAGTG
GTAAACTTCGCGTAAATCGCGAGAAAAGCGGTCTCGTCAGCAAGATCCAG
TCCTTCGTCATGGACACCGACTTTGTGAAGAACAGATTTTCGACACTGCC
AGGAAACAGTTGCTCAAGGCCTCGAACGGTCTCTATCCCGCTCCTCTGAG
ATTCTCGATGTGATCCGTGCTGGCGTGATAAGGAACCGATGCGGTTACGA
GCGGAGCGCAGGGCTTCGGCGAGCTATCGCACGCCGAGTCGATGGTTTGA
ATGCCCTGTCGTGAAAAACGGATGCAATAAACGATTGCAGCAACGCTCGT
AAAACGTGGGTGTCTGACTGTCTGATGGCCGATTGTACAGCTC
FMO05971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtpalpha-RA | 2725 | CG4389-RA | 177..1261 | 9..1077 | 4985 | 98.2 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 402..1412 | 83..1077 | 4615 | 98 | Plus |
| Mtpalpha-RB | 2886 | CG4389-RB | 177..253 | 9..85 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9575498..9576231 | 815..83 | 3620 | 99.9 | Minus |
| 2L | 23513712 | 2L | 9575297..9575435 | 949..812 | 630 | 98.6 | Minus |
| 2L | 23513712 | 2L | 9576518..9576593 | 84..9 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:17 has no hits.
FMO05971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:16 Download gff for
FMO05971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 172..1230 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:06 Download gff for
FMO05971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4389-RA | 171..1229 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:43 Download gff for
FMO05971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtpalpha-RA | 172..1230 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:43 Download gff for
FMO05971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9575295..9575435 | 812..950 | 97 | <- | Minus |
| 2L | 9575502..9576229 | 85..811 | 99 | <- | Minus |
| 2L | 9576518..9576597 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:16 Download gff for
FMO05971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9575295..9575435 | 812..950 | 97 | <- | Minus |
| arm_2L | 9575502..9576229 | 85..811 | 99 | <- | Minus |
| arm_2L | 9576518..9576597 | 1..84 | 95 | | Minus |
