FMO05972.5prime Sequence
1165 bp (1018 high quality bases) assembled on 2008-09-15
> FMO05972.5prime
CAGTCGACATGGATGCTCAGTTTGAGCACTTGTGCCGCATTTGCGCTGCC
AACACGAAAAGCAAGACGAATTCCGTGGTTGAAAGTGTGTTTATTTTTAA
AACACAGGGACTGAAGGATAAAATATCTCGACACCTTTATCTAAATGTAG
CTGAAGAAGATCCTCTGCCAAAAGTGCTCTGCAAATCTTGTTACCGCCAA
GTAGAGGCCACGGCGTCGCTTTCAAATATAGCAAAACATACTCAGCTCGT
GTTTCGGGACTTTCTCCTTAGTACACTGCCTAAGAATGCGAGGGAAGCGG
CTGCTGCACAACTGAGCGTTCCAGCAACCCAAATCCCACACCGACACGAC
GAAGTCCAAGCGGAAATCGATGAATTTCGCCCCATTTTGCTGACCCACGT
GCCGGAGTCCGGAAACACCGCTTCCAAGCCCCAACCAGCCAATTGCCTGG
AGCTGGCCCCAAAAACCGGCGAAAACTACTTGGCTGCATCTTCCTCATCC
TCTTCTCTGAGCAAACCCGCTGGATCAGTAAAGAGCTATCTTAACACTGG
GAGACGCAACAGCGTTTTTACAGACACTAGGTATGGATCGGCCCCACTGT
CTATCGCTCAACGAACTATGCAGTGTCTGCCTTCTTTGGTGCCCCTAAAC
ACAGAGTCATTGGGTAGCAACGCAATGAGAAAGAGCCCAGACACAAAACT
ATCGCCGAAAGGAGTAATAAACTTCATCCAGACTCATGGGCGCATCACGG
GCAATATACCTGAAGTCCAAGCAGAGGACAATACCGGGAAACATCAAACG
TGACAGATAGCAGAAAACACAGTTACAGCTTCCGTTCTTATTTCTTCAAA
CGTTAGCAATCCAGGAACGAAATCTCAGACAGTAATTTGTTTCTGCAGAA
AAGTAGAATCTTAAAAACACATTAAACAACATTAAAGCAATGCGTACCGG
ACAGGTATCACTGCTTAAAGGTGGCGCAATCGAAACCTATTGAAGATGTT
AGAACCACTGGTCACAACTAACACTGGTACCCATATGGTGTGACTTCGTG
AGAGCCACTGCAGAGCCAATGATTTGGCGGGCCAAAAGGAAGGGAGATGA
AGAACATTTCTCAACGCCTCGCCAAGCTAAGAACTTGCAGTCACCGAGAC
AAGTCCAAACCTCGA
FMO05972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dbr-RF | 4153 | CG11371-RF | 633..1752 | 7..1111 | 4880 | 96.9 | Plus |
| dbr-RE | 3454 | CG11371-RE | 243..1362 | 7..1111 | 4880 | 96.9 | Plus |
| dbr-RD | 3789 | CG11371-RD | 269..1388 | 7..1111 | 4880 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 68084..68837 | 278..1032 | 3285 | 98.3 | Plus |
| 2L | 23513712 | 2L | 67623..67765 | 7..149 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 67892..68023 | 147..278 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:09 has no hits.
FMO05972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:16 Download gff for
FMO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RD | 265..1307 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:07 Download gff for
FMO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RB | 515..1557 | 1..1043 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:57 Download gff for
FMO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dbr-RD | 265..1307 | 1..1043 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:57 Download gff for
FMO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 67619..67762 | 1..146 | 97 | -> | Plus |
| 2L | 67892..68023 | 147..278 | 100 | -> | Plus |
| 2L | 68085..68851 | 279..1043 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:16 Download gff for
FMO05972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 67619..67762 | 1..146 | 97 | -> | Plus |
| arm_2L | 67892..68023 | 147..278 | 100 | -> | Plus |
| arm_2L | 68085..68851 | 279..1043 | 97 | | Plus |
