FMO05974.5prime Sequence
1185 bp (-66 high quality bases) assembled on 2008-09-15
> FMO05974.5prime
AAGGAAGTTATCAGTCGACATGACATCATATCGGCCGGAGTTCTCCGCAT
CGGAGCAGTCGCAAATAGACGCGGAATTCTCTAGATTGGCCAGCAACAAG
AGTGTTTACCTGGATCATGCGGGCACCACTCTCTATGCCGAGAGCCAGGT
GACGGCCGCCGCGGAGCAACTGCAGCGCAATGTCATCTGCAATCCGCACA
CCTGCCGCCTCACCGGCGACTTCGTCGACCAGGTGCGATTCAAAATACTG
GAATTCTTTAACACCACCGCCGAAGATTACCATGTGATATTCACGGCGAA
TGCCACCGCTGCTTTGTCCCTGGTGGCGGAAAACTTTGACTTTGGATCCT
CTGGTGAGTTTCACTTCTGCCAGGAGAACCACACCTCAGTGCTGGGAATG
CGGGAAAGGGTCCGGGAAAACGGTATATACATGCTGAGGGAGAATGAAAT
CTCTGGCGGAAAGCACAAGGCGAACGGGAAAGTTCACGAGGTGTCCGGAA
AAACAGGAAACTCCTTGCTGACCTTTTCGGCCCAATGCAACTTTAGTGGT
TACAAAATCCCACTGGAAGTCATTGAGCAAATCCAAATCGATGGCTTGGC
CAAGCCGGGAAAAGAGCTTTGGAGCTCTTTGGGAGAGAAGAAGAAGAATA
TGCACAACGATTACTATATCTGCCTGGATGCGGCGTCTTTTTGTGGCCAC
CAGTCCGTTGGATCTGCAAAAGTATAGACCAGATTACGTGTGCCTTAGTT
TCTACAAGATCTTCGGTTATCCCACGGGCGTGGGGAGCCCTGCTCGTGAG
TCGACGAGGAGCCGAGGTCTTCCAGAACGCCGCTTTTTTGGCGTGGTACC
ATCAACTACGCATATCCGCATGCCATGGATTACCAACTGAAAGAGACCTT
CCATCACGCTCGAGGACGGCACCCTGCCATTCCTCCTCATTGTCGGTTGC
TCGAGGCTTCGACCCTGGAAAATGGTGCCCAAACGGACGAGTTTACCACG
ATGGAAAGAATTCCAGACCGTCTTGGCTGCCAGTATCTGGAGGGATCAGC
TGCGCCACGCTGGCTTCTATCCATGGGTGAGGCCCCTCGGGAGCTTGAAC
AATAAAGTGGGCTACCAAAGACAATCCCGGAAGGTGGGCATCTGGGCCCT
TAACTGCGCCTGAATTCGGTTCTGTTTGTGGTGGA
FMO05974.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mal-RB | 3209 | CG1692-RB | 578..1753 | 18..1181 | 4785 | 95.4 | Plus |
| mal-RA | 2749 | CG1692-RA | 118..1293 | 18..1181 | 4785 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20430744..20431459 | 244..956 | 3180 | 98.5 | Plus |
| X | 23542271 | X | 20430398..20430548 | 93..243 | 755 | 100 | Plus |
| X | 23542271 | X | 20430252..20430327 | 18..93 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:38 has no hits.
FMO05974.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:55 Download gff for
FMO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 113..1253 | 11..1142 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 11:06:17 Download gff for
FMO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 567..1707 | 11..1142 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:11 Download gff for
FMO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mal-RA | 113..1253 | 11..1142 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:11 Download gff for
FMO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20430247..20430326 | 11..92 | 95 | -> | Plus |
| X | 20430398..20430548 | 93..243 | 100 | -> | Plus |
| X | 20430744..20431526 | 244..1016 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:55 Download gff for
FMO05974.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20301274..20301353 | 11..92 | 95 | -> | Plus |
| arm_X | 20301425..20301575 | 93..243 | 100 | -> | Plus |
| arm_X | 20301771..20302553 | 244..1016 | 96 | -> | Plus |
