FMO05975.5prime Sequence
1132 bp (973 high quality bases) assembled on 2008-09-15
> FMO05975.5prime
AACAAAGTTATCAGTCGACATGAAGGCCAACAGCTGGATGTGCCTGCTGG
CGCTGCTTCTCGCCTGGCAGCTGCGAGCGGAGGAGCTCCAAGGGCCCAAC
ATTGATGGTACGGGCAGCAGTTTGGGTTCGGCCACAGGTACGGGTACGGG
AACGGGATTGGGCACGGGAACAGCCACGCCAACGCTGCCCAATGAGCCCT
CCACCCAGGCGGAGGCGGAGGAGGTGACCACGGCGGAATCAGAGTCGCGG
GTTCCGTCGGAAAGCAACGAACGCAAGGCAGACAAACCCAAGGAGTCCAC
AAAGTTTGCTTCCAGGACGAAGGTTATGCCGGCTTCCCTGTTCGAACGCC
TGTGGAACGAAAGTCTGATCAGGCGGCAAAAGCTGAAAGCCGAGATCGAG
CGCATCGAAGCCAAACGCAAATCCACTGAAGTGTTAGAACTTACCCCAGA
CCAAATAGAAGCTCAAACCGTGTACGACAACGCAATGGACATGTTGGCCA
AGCCAAGCACGGATAAGCGAGTAGCCATGATTTTGCTTAAGAAGGCTGCT
GCATTTAATCACCTCAAGGCGAGGGCGGAACTAGCCTGGGCCGCCCTACT
GGGTCAATGGATGGACTTTGATTTCAACCATGCTGTCGATGAGTTTGAGA
GTCTGGCCAACGAAGGCGTCCCAGAGGCTCACATGGGCCTGGGATTCCTT
TATTCGGTGGGCGTTGGCGGTAAAAATGTAAAGCCAGCCCCTGGCACTGA
TCCACTATAGCCCTGGCTGCCCTCGGTGATAATACTCCGGCGCAATGGCC
ATGGGGTATCGCTATCTTTATGGCATCAATGTGCCCATTAGCTGTGAGAA
GGCGCTGATCCACTACAAGCGAGTAGCCAAAAAGTGGCTTTCCAAGAATA
CCTTCCCCAATGGGCCGGTTGTGCATCGGGTAGACTGCTGGATGACCTAA
AGAATCCCGGCAGTCCGAAACCTGAGTTGTCGACTATTCACCTTCTTGCC
GATAAGGCGACTTCCAGTCGCCAGGTGGATTGGTCAGGTGTACATATCAA
GCCGCCAAGTCACGAGCAAGAATCATCAAAGGCTTGGGATAATTTCCAAT
GGCCGCGCAATGCAGGGAGTGCACACTGGGCA
FMO05975.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrd3-RB | 3286 | CG10221-RB | 644..1753 | 20..1123 | 4800 | 96.6 | Plus |
| Hrd3-RA | 3022 | CG10221-RA | 380..1489 | 20..1123 | 4800 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23756557..23757145 | 1043..460 | 2225 | 94.9 | Minus |
| 3R | 32079331 | 3R | 23757197..23757638 | 461..20 | 2210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:04:12 has no hits.
FMO05975.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:06 Download gff for
FMO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 368..1428 | 6..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 10:59:32 Download gff for
FMO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10221-RA | 489..1549 | 6..1063 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:29 Download gff for
FMO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrd3-RA | 368..1428 | 6..1063 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:29 Download gff for
FMO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23756537..23757143 | 462..1063 | 95 | <- | Minus |
| 3R | 23757197..23757650 | 6..461 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:06 Download gff for
FMO05975.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19582259..19582865 | 462..1063 | 95 | <- | Minus |
| arm_3R | 19582919..19583372 | 6..461 | 98 | | Minus |
